Paenibacillus sp. FSL H7-0357: H70357_05710
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Entry
H70357_05710 CDS
T03358
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paeh
Paenibacillus sp. FSL H7-0357
Pathway
paeh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H70357_05710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paeh03400
]
H70357_05710
Enzymes [BR:
paeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H70357_05710
DNA repair and recombination proteins [BR:
paeh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H70357_05710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIQ16232
UniProt:
A0A089HYR8
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All DBs
Position
complement(1244096..1245061)
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AA seq
321 aa
AA seq
DB search
MKLQPVIPFEPVLAAQLPSGGEWIAQIKWDGVRMLSYYDGSHAELINRRGNRRTPQYPEL
AEPRSYCRAGSFILDGEVIALSAGKPSFHEVMRRDSLKNEAAIRAVRPQVPVLYMVFDIL
YCNGLWLLDQPLSRRQQYLNEMLLPHPHVQNVPSYANPAELFSAAQSGSLEGIVCKDVNS
TYAPGGKDKRWQKRKIISDVTAVAGGVTFRDGIVNALLFGLYDDEGKLHYIGHAGAGRMT
AADWRNVTAAAHRLTVPKMPFAALPQRSKDAVWIKPELVFKLHFLEWNSSGTFRQPVIQA
QVDLPPQSCRIEQKGQLETRD
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcagccagtcattccatttgagcctgtactggccgcgcagcttccgtccggc
ggcgagtggatcgcacaaatcaaatgggacggtgtgcgcatgctttcttattacgatggc
agccatgcagagctcattaaccgccggggcaaccgccgcacgccgcagtatcccgagctg
gccgagccccgcagctattgccgggccggctcttttatcctggacggagaagtcattgcg
ctcagtgccggcaaaccttcctttcatgaggtcatgcgccgcgacagcctgaagaatgaa
gctgccatccgggcggttagaccgcaggttccggttctatatatggtgtttgacatccta
tattgcaacggactatggctgcttgatcagcccctatcccggaggcagcagtacttaaat
gaaatgctgctgccccatccccatgtccagaatgtgccgagctatgccaatccggcggag
ctgttctccgcagcccaaagcggcagtctggaaggcatcgtatgcaaggacgtgaatagt
acttacgcgccgggagggaaggacaaacgctggcagaagcggaaaatcatttccgatgta
actgctgtcgccggcggggtaacctttcgtgacgggattgtaaatgcgctgctcttcggc
ctgtacgacgacgaaggtaagctgcattacatcggtcatgccggtgcgggcagaatgacg
gcggcggattggcggaacgtgactgcggcagcccaccgcctcaccgtcccgaagatgcct
tttgcagccctgccccagcgcagcaaggatgcggtatggatcaagcccgagctggtcttc
aagcttcattttttggaatggaacagctcgggtacctttcgccaaccagtcattcaggca
caagtggatttgccgccgcagtcttgccggatagagcagaaggggcaattagaaacaagg
gattaa
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