Paenisporosarcina cavernae: D3873_06745
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Entry
D3873_06745 CDS
T05647
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
3.6.4.13
]
Organism
paek
Paenisporosarcina cavernae
Brite
KEGG Orthology (KO) [BR:
paek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paek03019
]
D3873_06745
03009 Ribosome biogenesis [BR:
paek03009
]
D3873_06745
Messenger RNA biogenesis [BR:
paek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3873_06745
Ribosome biogenesis [BR:
paek03009
]
Prokaryotic type
rRNA helicases
D3873_06745
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AYC29596
UniProt:
A0A385YSH6
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All DBs
Position
complement(1335818..1337122)
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AA seq
434 aa
AA seq
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MSKYTDYDFQPFLIKAIDQLGFSEPTPIQKEMIPLILKGKSAIGQSHTGTGKTHSFLIPI
VEKIIADKQEVQAVITSPTRELATQIHVELLKLIEGTEITSRLLIGGTDKKRAVDRLKVQ
PHIVVGTPGRIQDLVNDQALFVHTSPVLVVDEADLAFDLGFIKEIDQFASKMPEKLEMFV
FSATIPEKLQPFLKKYMDSPVHIKIGDKKPVADGIDFSLVPTKSLSRKKKLLQVLEGINP
YLCIIFANTRSNADSVADFLAENGFRVGRIHGDLNPRERTRMMKQVRDLEFQYIVATDLA
ARGIDIQGVSHVINYELPEDLEFFIHRVGRTARAGLTGQAITLYDPTEEDKIVQIEKMGI
PFVHRDVKNGEWSEMKERHARKNRVKHENEFDAKAKSVVRKPKKVKPGYKRAMKWEMDKV
RKRERRIKRNKKGE
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaatatacagattatgattttcagcctttcttaataaaggcgatagatcaatta
ggtttttcggaaccaacacccattcaaaaagaaatgattcctttaatcctaaaaggaaaa
agcgcaattggacaatctcacacgggtacagggaagacgcatagttttctaattcctatt
gtagaaaaaataattgcggataaacaagaagtacaagcagtaattacttctccaactcga
gaactagcaacgcaaattcacgtcgagttactgaagcttattgaaggtacggaaattacg
tcaagactgctaattggtggaacagacaaaaagcgtgcagtggatcgtttgaaagtacaa
ccccatattgttgtggggacccctggacgaatccaagatttagtaaatgaccaagccctt
tttgttcacacttctccagttctagtggtggatgaagcggatttagcatttgatttaggt
ttcataaaagaaattgatcaatttgcttccaaaatgcctgagaaactggaaatgtttgta
ttttcagcaacaattccagaaaaattacaaccatttttaaagaaatacatggattcacca
gttcatattaaaatcggcgataaaaaacctgtagctgatggaattgatttttctttagtt
ccaaccaaaagtctttctagaaagaaaaaattgctacaagtgctagaaggaataaatcca
tatttgtgtatcatttttgcaaatacgcgatcgaatgcagattctgttgcggatttttta
gcagaaaacggtttccgagttggaagaattcatggtgatttaaatccacgtgaacgaact
agaatgatgaaacaagtgagagacttggaatttcaatacattgttgctactgatttagca
gctcgtggaattgatattcaaggggtaagtcatgtcatcaattacgaattgccagaagat
cttgaattttttattcaccgtgtaggtcgaaccgctagagctggattaactggacaagct
attacgttatatgatcctacggaagaagataaaattgttcaaattgagaagatgggtatc
ccatttgtccaccgtgacgtgaaaaatggcgagtggagtgagatgaaagaacgccatgcc
cgtaaaaaccgtgtgaagcatgaaaatgaatttgatgcaaaagcgaaatctgttgtacgt
aaaccaaaaaaggtaaaaccaggctacaaacgtgcaatgaaatgggaaatggataaagtt
cgaaaaagagaaagaagaatcaagcgcaataaaaaaggggagtaa
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