Pseudomonas aeruginosa SCV20265: SCV20265_2046
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Entry
SCV20265_2046 CDS
T02971
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paes
Pseudomonas aeruginosa SCV20265
Pathway
paes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SCV20265_2046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paes03400
]
SCV20265_2046
Enzymes [BR:
paes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCV20265_2046
DNA repair and recombination proteins [BR:
paes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SCV20265_2046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AHC76160
LinkDB
All DBs
Position
complement(2168639..2172085)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPSLPASAGKQHWGNLPGAALSLAVAEAASSAKRFTLLLTADSQNAERLEQELRF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPQLKHGVLVVPISTALHRLAPT
RFLLGSSLVLDVGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSELPF
RIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGFRGRFRERFDVDYR
RCPIYQDLASGLTPSGIEYYLPLFFEETATLFDYLPQDTQVFSLPGIEQAAEQFWNDVRS
RYEDRRVDPERPLLPPAEVFLPVEDCFARLKNWPRVVASQEDVEPGVGRERFPALPLPNL
AIEAKAAEPLAALRRFIEEFPGRVLFCAESAGRREVLLELLARLKLRPEEVDGWPAFLAS
QARLAISIAPLDEGLLLDHPALALVAESPLFGQRVMQRRRREKTRDGGDAVIKNLTELRE
GAPVVHIDHGVGRYLGLITLEVDNQQAEFLMLQYAEDAKLYVPVANLHLIARYTGADDAL
APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFKDPQADYATFSAGFPF
EETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTT
LLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVENAARLLAEGKIDILIGTHKLLQEDVK
FANLGLVVIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATP
PARRLSVRTFVMEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELVPEARIG
IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL
GDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEVNLRVPALIPEDYLPD
VHARLILYKRIANAPDEEGLRELQVEMIDRFGLLPDPAKNLMRLTLLKLQAEKLGILKVD
AGPQGGRIEFAADTQVDPLVLIKLIQGQPNRYKFEGATLFRFQVPMERPEERFNTLEALF
ERLTPQTT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttcccagcctgccggccagcgccggcaagcaacactggggcaac
ctccccggtgccgcgctgagcctggctgtcgccgaggccgccagttccgccaagcgcttc
accctgctgctgaccgccgacagccagaatgccgaacgcctggaacaggaactgcggttc
ttcgcccccgacctgccggtattgcatttccccgattgggaaaccctgccctacgacgtc
ttttcgccgcaccaggacatcatttcccagcgcatcgccgccctctaccagttgccgcag
ctcaagcacggcgtgctggtggtgccgatctccaccgccttgcaccgcctggcgccgacc
cgcttcctgctcggcagcagcctggtcctcgacgtcggccagaaactcgacgtcgagcgg
atgcgcctgcgcctggaaggcgccggctaccgctgcgtcgacacggtctacgagcacggc
gagttcgccgtccgcggcgcgctgatcgacctgttcccgatgggcagcgagttgcccttc
cgtatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggagacccag
cgctccatcgacaaggtcgagtcgatccgcctgctgccggcacgcgaattccccctgaac
aaggaagcggtcaccggcttccgcggccgcttccgcgagcgcttcgacgtcgactaccgg
cgctgcccgatctaccaggacctcgccagcggtttgacaccctcgggaatcgagtactac
ctgccgctgttcttcgaggaaaccgcaaccctcttcgactacctgccgcaagacacccag
gtgttctccctgcccggcatcgaacaggccgcggagcagttctggaatgacgtacgcagc
cgctacgaggaccgccgggtcgatccggaacggccattgctgccgccggcggaagtgttc
cttccggtggaagactgcttcgcccggctgaagaactggccacgggtggtcgccagccag
gaggacgtcgagccgggcgtcgggcgcgagcgcttcccggccctgccgctgccgaacctg
gcgatcgaagccaaggccgccgagccgctggccgcgctgcgccggttcatcgaggagttc
cccggccgcgtactgttctgcgccgaatcggccggacgccgggaagtcctgctggagctg
ctggcccgactgaagctgcgccccgaggaagtcgacggctggccggccttcctcgccagc
caggcacgcctggcgatcagcatcgcgccgctggacgagggcctgctgctggaccatccg
gccctcgccctggtcgccgaaagcccgctgttcggccagcgcgtcatgcagcgccggcgc
cgggaaaagacccgcgacggcggcgacgcggtgatcaagaacctcaccgagctgcgcgaa
ggcgcgccggtggtgcacatcgaccatggcgtcggccgctacctgggcctgatcaccctc
gaggtggacaaccagcaggcggaattcctcatgctgcaatacgccgaggacgccaagctc
tacgtgccggtcgccaacctgcacctgatcgcccgctacaccggcgccgacgacgccctg
gcgccgctgcaccggctcggctcggaaacctggcagaaggccaagcgcaaggccgccgaa
caggttcgcgacgtcgccgccgaactgctcgacatctacgcccgccgcgccgcccgcgaa
ggcttcgcgttcaaggatccgcaggccgactacgcgaccttctcggccggcttcccgttc
gaggagacgccggaccagcaaagcgccatcgaggcggtggtcgccgacatgctcgcgccc
aggcccatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggcgatg
cgcgcggcgttcgtcgccgtgcatagcggcaagcaggtggcggtgctggtgcccaccacc
ctgctcgcccagcagcactacaacagctttcgcgaccgcttcgccgactggccggtgagc
gtcgaggtgatgagccgcttcaagagcgccaaggaagtcgagaacgccgcgcggctactg
gccgaaggcaagatcgacatcctcatcgggacccataagctgctccaggaagacgtgaag
ttcgccaacctggggttggtcgtgatcgacgaggaacaccgcttcggggtgcgccagaag
gagcagctcaaggccctgcgcagcgaagtggatatcctcaccctcaccgccacgccgatc
ccgcggaccctgaatatggccgtctccggcatgcgcgacctgtccatcatcgccacgccg
ccggcgcgccgcctgtcggtgcgcaccttcgtcatggagcagcagaacgcggtaatcaag
gaagcgctgctccgcgaactgctgcgcggcggccaggtgtactacctgcacaacgaagtg
aagaccatcgagaagtgcgcccgcgacctcgccgaactggtcccggaggcgcgcatcggc
atcggccacggacagatgcacgagcgcgagctggaacaggtgatgagcgacttctaccac
aaacgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagc
gccaacaccatcctcatcgagcgcgccgacaagttcggcctggcccagttgcaccagttg
cgcggccgcgtcggtcgcagccaccaccaggcctacgcctacctgctgacaccgccgcgc
cgtcagatgaccccggacgccgagaaacgcctggaagccatcgccaacgcccaggacctg
ggcgccggcttcgtcctcgccacccacgacctggagatccgcggcgccggcgagttgctc
ggcgacggccagagcgggcagatccaggcggtcggcttcaccctctacatggaaatgctc
gaacgggcggtgaaggccatccgcaagggcgagcaaccgaacctcgagcagccactgggc
ggcgggccggaggtcaacctgcgggtgcctgcgctgatccccgaggattacctgcccgac
gtgcatgcccggctgatcctctacaagcgcatcgccaacgcccctgacgaggaaggtttg
cgcgagttgcaggtggagatgatcgaccgcttcgggctcctgcccgatccggcgaagaac
ctgatgcgcctgacccttctgaaactgcaggcggaaaaacttggaatactcaaggtcgat
gccggaccgcagggcggtcgtatagaattcgccgccgatacccaggtcgacccgctggta
ttgatcaagctgatccagggccaaccgaaccgctacaagttcgaaggcgcaaccctgttc
cgcttccaggtgcccatggaacgaccggaagaacgcttcaataccctggaggcgctgttc
gagcgcctgacaccgcaaaccacctaa
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