KEGG   Planktothrix agardhii: NIES204_05520
Entry
NIES204_05520     CDS       T05658                                 

Definition
(GenBank) branched-chain alpha-keto acid dehydrogenase subunit E2
  KO
K00627  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Organism
pagh  Planktothrix agardhii
Pathway
pagh00010  Glycolysis / Gluconeogenesis
pagh00020  Citrate cycle (TCA cycle)
pagh00620  Pyruvate metabolism
pagh01100  Metabolic pathways
pagh01110  Biosynthesis of secondary metabolites
pagh01120  Microbial metabolism in diverse environments
pagh01200  Carbon metabolism
Module
pagh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:pagh00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    NIES204_05520
   00020 Citrate cycle (TCA cycle)
    NIES204_05520
   00620 Pyruvate metabolism
    NIES204_05520
Enzymes [BR:pagh01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.1  Transferring groups other than aminoacyl groups
    2.3.1.12  dihydrolipoyllysine-residue acetyltransferase
     NIES204_05520
SSDB
Motif
Pfam: 2-oxoacid_dh Biotin_lipoyl E3_binding
Other DBs
NCBI-ProteinID: BBD53289
UniProt: A0A2Z6C9X7
LinkDB
Position
complement(671635..672897)
AA seq 420 aa
MAIHEVFMPALSSTMTEGKIVSWQKSPGDKIEKGETVLIVESDKADMDVESFYEGYLATI
ITPAGEAAPVGNTIALIAETQGEIEQAKQKAASATPATPAAVAQPVAASPVAATAVVATP
TPPKNRRIIASPRARKLAKELNLDLATLTGSGPNGRIIAEDVETASGRPAAVQTPSQIPA
PAVSKPMTAPTPATVPLGQVAPMNTLQNAVVRNMTASLSVPVFRVGYTITTDGLDQLYKQ
LKSKGVTMTALLAKAVAMTLQKHPILNASYVENGIQYRAGINIAIAVAMPDGGLITPVLK
NADQIDLYSLSRTWKDLVERSRAKQLQPDEYSSGTFTLSNLGMFGVDKFDAILPPGQGSI
LAIGASRPQLVVSADGSMAVKRQMQVNITCDHRIIYGADAATFLQSLAKLIETNVQSLTM
NT seq 1263 nt   +upstreamnt  +downstreamnt
atggccattcatgaagtttttatgcccgccctgagttccaccatgaccgagggtaaaatc
gtttcttggcaaaaatcccccggtgataaaattgaaaagggcgaaacggtcttgatcgtt
gagtcggataaggcggatatggatgtggaatccttctatgaagggtatctggccacgatt
attactccggccggagaagctgcccccgtgggtaataccattgccttaatcgcggaaact
caaggggaaattgaacaggcgaaacaaaaagccgcctctgctaccccggctacccccgcc
gccgtagcccaacccgttgcagctagtcccgtagcagccacggccgttgtcgcaaccccg
accccccctaaaaatcgccgaattattgcttctcctcgcgcccgcaaattggccaaggaa
ctcaatttagatttagcaaccttaaccggaagtgggccaaatggtcggatcattgcggaa
gacgtggaaacagcatcgggacgtccggctgcggttcagactccctcccaaatcccggct
ccggctgttagtaagcccatgacagccccaactccagcaactgttcccctgggtcaagtt
gccccgatgaataccctccaaaacgccgtggtcagaaatatgaccgcgagtttatcggtg
ccggtattccgggtgggatatacgattacaacggatgggttggatcagctttataaacaa
ctgaaatctaagggtgtcaccatgacggcactcttagcaaaagcggtggcgatgacgtta
caaaaacatccgattttgaatgccagttatgtagaaaatgggattcaatatcgggcggga
attaatattgcgatcgccgtggctatgcccgatggtggtttaattactccggtattaaaa
aatgccgatcaaattgatctttattccctgtctcggacttggaaagatttagttgaaagg
tctagggcgaaacagttacaacccgatgaatatagcagtggaacctttactctctccaat
ttaggaatgtttggagtcgataagtttgatgcgattttacctccgggtcaaggttcaatt
ttagccatcggtgcgtcccgtccccaattagtggtttctgccgatggttctatggcggtt
aaacgccaaatgcaagtgaatattacttgtgatcaccggattatttatggggcggatgcg
gcgacattcctacaaagtttggctaaattgattgaaactaatgttcagtcgttgactatg
taa

KEGG   Planktothrix agardhii: NIES204_22400
Entry
NIES204_22400     CDS       T05658                                 

Gene name
pdhB
Definition
(GenBank) pyruvate dehydrogenase E1 beta subunit
  KO
K00162  pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1]
Organism
pagh  Planktothrix agardhii
Pathway
pagh00010  Glycolysis / Gluconeogenesis
pagh00020  Citrate cycle (TCA cycle)
pagh00620  Pyruvate metabolism
pagh01100  Metabolic pathways
pagh01110  Biosynthesis of secondary metabolites
pagh01120  Microbial metabolism in diverse environments
pagh01200  Carbon metabolism
Module
pagh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:pagh00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    NIES204_22400 (pdhB)
   00020 Citrate cycle (TCA cycle)
    NIES204_22400 (pdhB)
   00620 Pyruvate metabolism
    NIES204_22400 (pdhB)
Enzymes [BR:pagh01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.4  With a disulfide as acceptor
    1.2.4.1  pyruvate dehydrogenase (acetyl-transferring)
     NIES204_22400 (pdhB)
SSDB
Motif
Pfam: Transket_pyr Transketolase_C AAA_26 Flu_NP
Other DBs
NCBI-ProteinID: BBD54940
UniProt: A0A2Z6CF62
LinkDB
Position
2556745..2557755
AA seq 336 aa
MIHARLSTIAMAPTLLFNALKQATDEEMARDPRVFVLGEDVGQYGGSYKVTKDLYEKYGE
LRVLDTPIAENSFTGMAVGAAMTGLRPIIEGMNMGFLLLAFNQIANNGGMLRYTSGGNFK
MPLVIRGPGGVGRQLGAEHSQRLESYFQSVPGLKMVACSTPYNAKGLMKAAIRDDNPVLF
FEHVLLYNLKEEIPDEEYIVPIDKAEIVRRGKDVTILTYSRMRHHVMQAVPTLVKQGYDP
EVIDLISLKPLDFDTIGESIRKTHRVVIVEECMKTGGLGAEITASINDRLFDELDAPVLR
LASQDIPTPYNGALERLTIVQPEQIVEGVKSIISYQ
NT seq 1011 nt   +upstreamnt  +downstreamnt
gtgatccacgctcgcttatcaacaattgcaatggcaccaaccctactttttaacgccctg
aaacaagcaaccgatgaagaaatggctcgtgaccccagagtgttcgtgttgggggaagat
gtgggtcaatatggcggttcctataaagttactaaggatctttatgaaaaatacggggaa
ttacgggttttagatactccgattgccgaaaatagttttacaggaatggctgttggtgct
gccatgactgggttgcggccgattattgaaggcatgaatatgggatttttgttactcgcc
ttcaaccaaattgctaacaacggcggaatgctgcgctatacttccgggggaaattttaaa
atgcccctggtgattcgtggccctggaggtgtgggccgtcaactgggggcggaacactcc
caacgcttagaatcctatttccagtctgttcccggcttaaaaatggtcgcctgttcgact
ccctataatgctaagggattaatgaaagcggcgattagagatgataacccggtgctattt
tttgagcacgttctgttatacaacctcaaggaagaaatccccgacgaggaatatattgtt
cctattgataaggcggaaatagtcagacgggggaaagatgtaacaattctgacctattct
cggatgcgccatcatgtcatgcaagcggttcctactctggtcaaacagggttatgatcca
gaagtgattgatttaatttctcttaaacctctcgattttgacacgataggggaatctatt
cgcaaaacccatcgggtagttatcgtggaagaatgtatgaaaaccgggggactgggggcg
gaaattaccgcttcaattaatgatcgtctatttgatgaattggatgcacctgtattaaga
ttggcgtctcaagatattcctacaccttataacggtgctttagaacgactgactattgtg
caaccggaacaaattgttgagggagttaaatcaattatcagttatcagtaa

KEGG   Planktothrix agardhii: NIES204_31380
Entry
NIES204_31380     CDS       T05658                                 

Definition
(GenBank) pyruvate dehydrogenase E1 alpha subunit
  KO
K00161  pyruvate dehydrogenase E1 component alpha subunit [EC:1.2.4.1]
Organism
pagh  Planktothrix agardhii
Pathway
pagh00010  Glycolysis / Gluconeogenesis
pagh00020  Citrate cycle (TCA cycle)
pagh00620  Pyruvate metabolism
pagh01100  Metabolic pathways
pagh01110  Biosynthesis of secondary metabolites
pagh01120  Microbial metabolism in diverse environments
pagh01200  Carbon metabolism
Module
pagh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:pagh00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    NIES204_31380
   00020 Citrate cycle (TCA cycle)
    NIES204_31380
   00620 Pyruvate metabolism
    NIES204_31380
Enzymes [BR:pagh01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.4  With a disulfide as acceptor
    1.2.4.1  pyruvate dehydrogenase (acetyl-transferring)
     NIES204_31380
SSDB
Motif
Pfam: E1_dh TPP_enzyme_C Transketolase_N DXP_synthase_N
Other DBs
NCBI-ProteinID: BBD55820
UniProt: A0A2Z6CHP2
LinkDB
Position
complement(3534951..3535982)
AA seq 343 aa
MVQERTLPTFKADANAVTRDEGLMLYEDMVLGRLFEDKCAEMYYRGKMFGFVHLYNGQEA
VATGMIRAGRRDEDYVCSTYRDHVHALSAGVPPREVMAELFGKATGCSKGRGGSMHLFSS
AHNLLGGFAFVAEGIPVATGAAFQTKYRREAINDPNADQVTMCFFGDGACNNGQFYECLN
MAALWNLPIIYVVENNKWAIGMAHDRATSDPEIYKKGPAFGMPGYEVDGMDVLAVREVAK
KAVARARAGEGPTLVEALTYRFRGHSLADPDELRDKDEKEFWFARDPIKKFAAHLTEHNL
ATHEELKAIDQQVQAIIDDAVEFAQSSPEPDPKELYRYIYADD
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggtacaggaacgcacgttaccgacgtttaaggcggatgcaaatgctgtaacccgcgat
gaagggttaatgctgtatgaggatatggtgctggggcggctatttgaagataaatgtgcc
gagatgtattatcggggcaaaatgttcggttttgtccacctgtacaacggtcaagaagcc
gtggctacggggatgatccgggcgggtcgtcgggatgaggattatgtttgtagtacctat
cgggatcacgttcatgctttgagtgcgggggttccaccccgggaagttatggcggaatta
tttggtaaggccacaggttgttctaagggtcggggcggctcgatgcacctattctcctcg
gcccataatttattaggggggtttgccttcgttgctgaggggattccggtggctacaggg
gcggcttttcaaaccaaataccgcagggaagcgatcaatgatccgaatgccgatcaggta
actatgtgtttctttggggatggcgcttgtaataacggccaattctatgaatgtttgaat
atggcggcattatggaatttgccaattatttatgtggtggaaaataataaatgggcgatc
ggcatggcccatgaccgggcaacttctgacccggaaatctacaaaaaaggcccggctttt
ggaatgcctggttatgaagtggatgggatggatgttttggcggttagggaagtggctaaa
aaggccgttgctcgcgcccgggcgggtgaaggcccaactttagttgaagctttaacctat
cgttttcgtggacattctttggccgatcccgatgaattacgcgataaagatgagaaggaa
ttttggtttgctcgtgatccgattaaaaaatttgcggctcatttaaccgaacataatttg
gcaacccatgaggaattgaaagctattgatcagcaagttcaagccattattgatgatgcg
gtagaatttgcccaaagtagcccggaacctgatcctaaagagttgtatcgttatatttat
gccgatgattaa

KEGG   Planktothrix agardhii: NIES204_40740
Entry
NIES204_40740     CDS       T05658                                 

Gene name
lpdA
Definition
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Organism
pagh  Planktothrix agardhii
Pathway
pagh00010  Glycolysis / Gluconeogenesis
pagh00020  Citrate cycle (TCA cycle)
pagh00260  Glycine, serine and threonine metabolism
pagh00280  Valine, leucine and isoleucine degradation
pagh00310  Lysine degradation
pagh00380  Tryptophan metabolism
pagh00620  Pyruvate metabolism
pagh00630  Glyoxylate and dicarboxylate metabolism
pagh00640  Propanoate metabolism
pagh01100  Metabolic pathways
pagh01110  Biosynthesis of secondary metabolites
pagh01120  Microbial metabolism in diverse environments
pagh01200  Carbon metabolism
Module
pagh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:pagh00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    NIES204_40740 (lpdA)
   00020 Citrate cycle (TCA cycle)
    NIES204_40740 (lpdA)
   00620 Pyruvate metabolism
    NIES204_40740 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    NIES204_40740 (lpdA)
   00640 Propanoate metabolism
    NIES204_40740 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    NIES204_40740 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    NIES204_40740 (lpdA)
   00310 Lysine degradation
    NIES204_40740 (lpdA)
   00380 Tryptophan metabolism
    NIES204_40740 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pagh04147]
    NIES204_40740 (lpdA)
Enzymes [BR:pagh01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     NIES204_40740 (lpdA)
Exosome [BR:pagh04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   NIES204_40740 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox FAD_oxidored FAD_binding_2 GIDA K_oxygenase 3HCDH_N UDPG_MGDP_dh_N AlaDh_PNT_C 2-Hacid_dh_C
Other DBs
NCBI-ProteinID: BBD56740
UniProt: A0A2Z6CK98
LinkDB
Position
complement(4500989..4502419)
AA seq 476 aa
MDYDLVIIGAGVGGHGAAIHAVGCGLKTAIIEAADMGGTCVNRGCIPSKALLAASGRVRE
LHNTHHLKNLGIQLGQVSFDREQIANHADNIVTKLRGDLTNSLKRLGVDVIQGWGKIAGA
NKVTVETTNGEKTITAKDIILAPGSVPFVPPGITIDHQTVFTSDDAVKLASLPQWIAIIG
SGYIGLEFSDIYTALGCEVTMIEALDQLMPTFDPDIAKLAQRVLINPRDIETKVGKLALK
VTPGSPVIIELADTKTKEVEEVLEVDACLVATGRIPVSKNLGLESVNVEPIRGGFIPTND
HLEVLSGGEPVPHLWAIGDATGKMMLAHTASAQGVAVVETICGRPRAVDYRSIPAAAFTH
PEISYVGLTEPAAKELGQTEGFEIATVKTYFKGNSKAIAEGETEGMAKVIYRKDTGEILG
VHIFGLHASDLIQEAANAMYHRQSVHDLVFSVHTHPTLSEVLDEAYKRAVFSVGGH
NT seq 1431 nt   +upstreamnt  +downstreamnt
atggattacgatttagtgattattggtgcgggagtgggcggacatggtgctgctatccac
gccgtcggttgtggcttgaaaaccgcaattattgaggcggcggacatggggggaacttgt
gttaaccgaggctgtattccctctaaagcgttattagcggcgtcgggacgggtcagagaa
ttacataatacccatcacttaaaaaatttagggattcagttaggacaagtcagttttgat
cgtgaacaaattgctaaccatgctgataatattgtcactaaacttcggggtgacttgact
aatagtttgaagcggttaggggttgatgtaattcaaggttggggtaaaattgccggggcg
aataaagttaccgttgaaactactaacggagaaaaaacaattaccgctaaagatattatt
ttagcaccgggttctgtgccttttgttcccccaggaattacgattgatcatcaaacagtt
tttaccagtgatgatgcggttaaattagcatccctaccccaatggattgcgattattgga
agtggctatatcggattagaattttctgatatttatacggctttaggttgtgaagttacc
atgattgaagccttagatcaattaatgccaacttttgatcctgatattgctaaattagct
caacgggttttaattaatcccagggatattgaaactaaagtcggaaaattagccttaaaa
gtaacgcctggttctccggttattattgagttagccgataccaaaactaaagaagtagaa
gaagtactagaagtggatgcttgtttggttgctaccgggcggattccggtgagtaaaaat
ttaggtttagaatcggtgaatgttgaacctattcggggcggttttattcctacaaatgat
catttagaggtattgtctggaggcgaacctgttccccatttatgggcgattggagatgcg
acgggtaaaatgatgttagcccataccgcatccgcccagggagtagccgttgtagagact
atttgcggacgtcctcgcgccgtagattatcgtagtattccggcggctgcttttacccat
cctgaaattagttatgtgggtttaactgaacctgctgcaaaggaattaggacaaacagaa
gggtttgaaattgcaacggtaaaaacctattttaagggtaattctaaagcaattgcggag
ggagaaaccgaaggtatggctaaagtgatttatcggaaagatacgggggaaattttagga
gttcatatctttggtcttcatgcttctgatttaattcaagaagcggcaaatgctatgtat
caccgtcaatctgtccatgatttagtcttctcagttcatacccatcctaccctttcagaa
gtgcttgatgaagcctacaaacgggctgtttttagtgtggggggtcattag

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