Planktothrix agardhii: NIES204_34540
Help
Entry
NIES204_34540 CDS
T05658
Symbol
sigC
Name
(GenBank) group 2 RNA polymerase sigma factor SigC
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
pagh
Planktothrix agardhii
Brite
KEGG Orthology (KO) [BR:
pagh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pagh03021
]
NIES204_34540 (sigC)
Transcription machinery [BR:
pagh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIES204_34540 (sigC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
BBD56131
UniProt:
A0A2Z6CHP0
LinkDB
All DBs
Position
3861421..3862674
Genome browser
AA seq
417 aa
AA seq
DB search
MPATKIDAENNLNPSFQDYSEPDEVMNQDLEPDLDDLIDLEIENASDVKLQKPNNNRRTT
DLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRLVDLRDNAAEQDEGLINTYVRLIKTRD
KLSAQLGHRPSLERWATTAGVDVAELKPMLATGKRCWAEIAGLTVEELDQIQTEGIQSKD
RMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIRQ
GITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIDDIAHELEMTPVQVREV
LLRVPRSVSLETKVGTDKDTELGDLLETEEVTPEEMLMRESLHKDLQNLLADLSSRERDV
ILMRYGLGDGHPYSLAEIGRALELSRERVRQIEAKALQKLRQPKRRNRVRDYLESLS
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgccagccactaaaattgatgccgagaacaacttaaacccctcttttcaggactattct
gagcctgatgaggtaatgaatcaggatcttgagcctgatttggatgatttaattgatttg
gagatagagaatgccagcgatgtcaaactccagaagcccaacaataatcgtcgtacaaca
gatttagttcgattgtatctccaagaaattggtcgggtgcgtctgttggggcgggatgaa
gaagtatcagaagcccaaaaggtacagcgttatctgaggttagttgacttacgggacaat
gctgccgagcaggatgagggactgattaatacttatgtgcgattgatcaaaacccgggat
aaattatcggctcagttgggtcatcgtccatctttagagcgatgggcaacaacggctggg
gttgatgtagccgaactcaagccgatgttagcaacaggaaaaaggtgttgggcagaaatc
gcgggtttgaccgttgaggaattggatcagattcaaaccgaagggatacagtccaaagac
cggatgattaaagcgaatttgcgtttagtggtatcggtggcaaagaaatatcagaaccga
ggtttagaactactagatttaattcaagaaggaactttaggattggaacgggcggtggag
aagtttgacccgacccggggatatcgttttagtacctattcttattggtggattcgtcaa
gggattacccgggcgatcgctacccaaagccgcacgattcgtcttccggttcatattacc
gaaaaactgaataaaattaaaaaagcacaacggaaaatttcccaggaaaaaggtcgtacc
gccaccattgatgatattgcccatgagttagaaatgactccggttcaagtccgagaagtg
ttgcttcgggttccccgttctgtgtctttggaaacgaaggtaggaacggataaagatacg
gaattaggggatttactcgaaaccgaggaggtcacaccggaagaaatgctgatgcgtgaa
tctttgcataaggatttacaaaaccttttagcggatttaagtagtcgggaacgggatgtg
attttgatgcgctatggtttgggggatggacacccctattccctggcggaaattggtcgg
gcactggaattatcccgggagcgagtccgtcaaattgaggctaaagctctacaaaaactg
cgtcaacctaaacggcgtaaccgggttcgggattatttggagtctttgagttaa
DBGET
integrated database retrieval system
