Pseudoalteromonas aliena: B0W48_04260
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Entry
B0W48_04260 CDS
T04815
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
paln
Pseudoalteromonas aliena
Pathway
paln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0W48_04260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paln03019
]
B0W48_04260
Enzymes [BR:
paln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B0W48_04260
Messenger RNA biogenesis [BR:
paln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0W48_04260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQP99086
UniProt:
A0A1Q2GVF5
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All DBs
Position
complement(973306..974553)
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AA seq
415 aa
AA seq
DB search
MSATTFSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVL
PLLHKLLNSPKKDESGLARVVILTPTRELAQQVFASFEKYAQGTNINGALAYGGVSIGPQ
IKALKTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPG
DRQTLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHM
IGMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGATRVL
VATDVAARGLDISTLRYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEE
IEVLLDTRLTPQWLEGYEPDPNKKPKDNRKNTNKSRKDRDKKRITGKREPSRRRK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccactacgttctcatcacttaatctcgacccgttattattaacagcgattgag
caaaataattacacgcaacctaccgcaatccagattaaaactattccgcctattttagcc
ggaagtgatgtaatgggcagtgcgcaaacaggcacaggtaaaaccgctgcgtttgtttta
cccttgctacataagcttttaaattcccccaaaaaagatgagtcaggacttgcccgcgtt
gtaattttaacgccaacgcgagagcttgctcagcaagtatttgccagctttgaaaaatat
gcacaaggcactaatatcaatggtgctttggcgtatggtggcgtaagtattggcccacaa
ataaaagcgcttaaaacagcgcaagttattgtggccacaccagggcgtctgctcgatcat
atagttaaaggtagcgtcgtactttcaagcgtagattcgctcgtatttgatgaagcagac
cgtatgcttgatatgggctttattgatgaaattagacgtatattgcgtcatattccaggc
gatcgccaaactctactcttttctgctacgtttgatgacagcgtgtttgaactgagtaaa
aaattacttaaaaatccagaactaattgaagttgataagcgcaactcagccgcagttgaa
gtagagcaagttatttacgctgtagatgaagaccgtaagcgcgaacttgtatcgcacatg
attggcatgaaaaactggcgccaagtgcttatttttactcgcacaaaacaaatggccgac
caactcgctaaggaaatgtgtaaagacggtttaaaaaccgaatcaatacatggtgacaag
tcgcaaggcgcacgtgaccgcgcactacaaaactttaaagaaggcgctactcgtgtactt
gttgctactgatgtagcggcacgtggtttagatatttctacacttagatacgtcattaac
tttgagctgccatacatagcagaagactatgtgcatcgtattggtcgtaccggtcgagcg
ggcgaacaaggccttgctatgtcactagtaagtcttgatgagcaatggttgctagaagaa
attgaagtgctactcgatacgcgtttaactccacagtggttagaaggctatgagcctgat
ccaaataaaaagccaaaagataatcgtaaaaatactaataagtcgcgaaaagatcgcgat
aaaaaacgtattacaggaaaaagagagccaagtaggcgccgtaagtaa
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