Pantoea ananatis LMG 20103: PANA_3107
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Entry
PANA_3107 CDS
T01195
Symbol
recB
Name
(GenBank) RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pam
Pantoea ananatis LMG 20103
Pathway
pam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PANA_3107 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pam03400
]
PANA_3107 (recB)
Enzymes [BR:
pam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PANA_3107 (recB)
DNA repair and recombination proteins [BR:
pam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PANA_3107 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
DUF4378
AAA_11
Pox_P4B
Motif
Other DBs
NCBI-ProteinID:
ADD78274
UniProt:
D4GLM1
LinkDB
All DBs
Position
complement(3486088..3489627)
Genome browser
AA seq
1179 aa
AA seq
DB search
MMQSRPESLNPLTLPLSGERLIEASAGTGKTFTIGLLYLRLLLGLGGENAWRRPLSVEEI
LVVTFTEAATAELRGRIRDNIHQLRLACVRGKSHNPMHQQLMEQIADLPQAASQLLAAER
QMDEAAIFTIHGFCQRMLNLNAFESGMLFEQELIENEQTLLRQATADFWRRQCYPLSLDV
ARVIAAEWSGPDSLLTTLRPWLQGESPTLRRPPRPEETLASRHAANLERINALKQQWQAA
SADVEGLISASGVDKRSYSSKHLPNWVAKVTQWAQSETLDYQLPKELERFGQQVLHEKTK
KGEAPQHALFDAVDRFLAEPLTLRDVIIWQALTEVREAVQREKRQRALLGFDDLLSRLDE
ALQQPGGALLAETIRGRFPVALIDEFQDTDPQQYRIFRTLYLHQPELALLLIGDPKQAIY
AFRGADIFTYLRARSEVSAHYTLDTNWRSSPGMVDSVNRLFSQVDSPFLFSSIPFLPVSP
AAPNQALKLIYQQQPQPALRFWLQPGEGVGVSDYQQFMAQQCAADISRWLVAGQQGQALI
GKGDALQPVKASDITVLVRSRNEASLIRDALNSLSIPSVYLSSRDSVYTTPEARELLWLL
QAVQSPEQERLLRSALATSIFAIDAAELDALAQNERHWDALVEQFVSWQQIWHQRGVLPM
LRDVMITRQLAENMLASDNGERRLTDLMHLGELLQEAAVQLDSTHALVRFLAQQIARPDS
QAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAGFRESASALYHDRESFAAMLDV
QGDEYSLTLAEEERLAEDLRLLYVALTRSVHHCSVGIAPLIKGARKKAGESDLHKSALGF
LVQRGEIADAAQLSQHLQALEGAGIEVISSALQPGAIWHEGQGSNDALSSREMTRALADS
WRVTSYSGLQQHGSSPLLDALPKFDIDAAGETADEEDTLLTPHHFPRGAAPGTFLHGLFE
SIDFTEPPEALWLEDQLQQNGYSLSWLPVIQQWIARVLTTPLNKEGVTLASINSRDRLIE
MEFYLPINNLLTATDLDALVRRYDPLSQRGPALDFRQVKGMLKGFIDLVFRWQGKYYLLD
YKSNWLGESHAAYTPEAMEQAMIDHRYDLQYQLYTLALHRYLQHRLAGYDYQQHFGGVFY
LFLRGVDGSPADNGIFATRPDPAFIDEMDRLFGNTEEML
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagtcaagacccgagtcgcttaacccgttaacgctgccgctgagcggcgagcgg
ttaattgaggcgtcagcggggaccggtaaaacctttacgatcggcctgctctatttacgt
ctgctattagggctgggcggcgagaacgcctggcgcaggccgctgtccgtcgaagagatt
ctggtggtgacctttaccgaagccgctacggctgaactgcgcggtcgtatccgtgacaat
atccatcagctacgtctggcctgcgtgcgtggtaaaagccataaccccatgcaccaacag
ctgatggagcagatcgccgatctgccccaggccgcgtcacaactgctggcggccgagcga
caaatggatgaggcggcaatttttaccatccacggcttttgtcagcgcatgcttaacctg
aacgcttttgaatcgggcatgctgttcgagcaggagctgattgaaaacgaacaaacgctg
ctccgacaggccacggccgatttctggcgtcgccagtgttatcccctgtcgctggatgtg
gccagagtcattgcggcggagtggagcgggccggacagcttactgaccacgctgcggccc
tggctgcagggggagtcaccgacgctcaggcgcccacctcgcccagaggaaacgctggcc
tcccgccatgcggccaatcttgagcgaattaacgcccttaagcagcagtggcaggctgcc
agcgccgatgtggaagggctcattagcgcgtctggtgttgataagcgcagttatagcagt
aagcacttacctaactgggtggctaaagtcacccagtgggcacagagcgaaacgcttgat
tatcaactgcccaaagagctggagcgctttggacagcaggtgctgcacgagaagaccaaa
aagggcgaggcaccgcagcatgcattgtttgatgcggtagatcgctttctggccgaaccg
ctgacgttgcgagacgtcattatctggcaggccctgaccgaggtccgcgaggcggtccag
cgcgaaaagcgtcagcgcgcactactgggctttgatgacctgttgagccgtctggatgag
gcgcttcaacagccgggcggggcactactggcggaaacgattcgcgggcgcttcccggtc
gcgctgattgatgaattccaggataccgatccgcagcagtatcgtatctttcgtacgctg
tatctgcatcagccagagctggccctgctactcattggtgaccccaagcaggcgatttat
gccttccgcggtgcggatatctttacctatctgcgcgcccgtagtgaagttagtgctcac
tacacattagatactaactggcgctcctcgcctggcatggtggacagcgttaaccggctg
ttttcacaggttgattcgccgtttctgttctcttcgattccttttctcccggtcagtccg
gctgcgcctaatcaggctctgaagctgatttatcagcagcaaccgcagcccgcgctgcgc
ttctggcttcagccgggtgaaggtgtgggagtgagtgattaccaacaatttatggcgcag
cagtgtgccgcggatatcagccgctggctggtagccggacagcaggggcaggcgctgatt
ggcaaaggcgatgccctgcagccggttaaggcatcggacattaccgtgctggtgcgcagc
cgtaacgaggccagcctgatccgcgatgcactaaacagcctgtcgattccctccgtttat
ctttccagccgcgacagcgtttacaccacgccggaagcgcgcgaactgttatggctcctg
caggcggttcagtcacctgaacaggagcgattgctgcgcagcgcgctggcgacgtccatc
tttgctattgatgccgccgaactggacgcgctggcgcagaacgaacgccactgggatgcg
ctggtggagcagtttgtcagctggcagcaaatctggcatcagcgcggcgttttacccatg
ctgcgcgacgtgatgatcacgcggcaactggccgaaaatatgctggcatcagacaatggc
gaacggcgcttaaccgatctgatgcacttgggtgaactcctgcaggaagcggcggttcag
ctcgacagcacccatgcgctggtgcgttttctggcgcagcaaattgcccgtcccgatagc
caggccgccagtcagcaactgcgtcttgaaagcgatcgtcatctggtgcaaatcgtcacc
attcataagtcgaaaggattgcagtatcccctggtctggctgccctttgccgccggattc
cgcgagtccgccagtgcgctgtatcacgatcgtgaaagctttgctgcgatgctggacgtg
cagggggatgagtacagcctgacgctggcagaagaggagcgcctggcagaggatttacgc
ctgctctacgtggctctgacccgttcggttcaccactgcagcgtaggtattgcaccgctg
attaagggcgcgcgtaaaaaagcgggtgaaagcgacttgcacaaaagcgcgctcggtttc
ctggtgcagcgcggcgaaatcgccgatgccgcgcagctcagtcagcatctgcaggcgctt
gagggcgcgggaattgaggttatcagcagcgcgctccagcccggggcgatctggcatgaa
ggccagggcagcaacgatgcgctgagcagtcgggaaatgacgcgagcgctggccgacagc
tggcgcgtcaccagttattcgggtttgcagcagcacggtagctcaccgctgctggacgcc
ttgcctaaatttgatatcgacgccgcaggcgaaacggcagacgaagaggataccctgttg
acgccgcaccattttccgcgcggtgcggcacccgggacgtttctccacggattgtttgaa
tcaatcgatttcaccgaaccgccagaggcgctgtggctggaagatcagctccagcaaaac
gggtattcactcagttggctcccggtcattcagcagtggattgcgcgcgtcctgacaacg
ccgcttaacaaggaaggcgtaacgctggccagtattaacagccgcgaccggctgattgaa
atggaattttatctcccgatcaataacctgctgaccgcgaccgatctggatgcgctggta
cgccggtacgatccgctgtcgcagcgcggtccggcactggatttccgccaggtgaaaggc
atgttgaaagggttcattgatttggtgttccgctggcagggaaaatactatctgctggat
tataaatcgaactggctgggggaaagtcatgccgcatacacgcccgaggcgatggagcag
gcgatgatcgaccaccgctacgatctgcaataccagctgtataccctggcgctgcaccgt
tatctccagcatcgtctggcaggctatgactaccaacagcatttcggcggcgtcttttac
ctgtttctgcgtggcgtcgatggcagcccggccgacaacggcattttcgccacccgaccc
gacccggcgtttattgatgaaatggacaggctgtttggcaatacagaggaaatgttatga
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