Pseudomonas amygdali: BKM19_003330
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Entry
BKM19_003330 CDS
T05354
Name
(GenBank) RNA polymerase subunit sigma
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamg03021
]
BKM19_003330
Transcription machinery [BR:
pamg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BKM19_003330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
Terminase_5
Sigma70_ECF
HTH_38
HTH_28
PB1-F2
Motif
Other DBs
NCBI-ProteinID:
AVB12745
UniProt:
A0A2G4CTM3
LinkDB
All DBs
Position
complement(535565..536131)
Genome browser
AA seq
188 aa
AA seq
DB search
MSSHESLFDYEATLQACARGDKQALQRLYQQESARLLGVAQRLVRDRALAEDIVHDAFLK
IWSHAASFDAARGSARGWIFSVTRHLALNTLRNTAREVRVEDDGSDDHHEQATLEGWQET
GDAFDWRVNPGRMTSCMEQLEPVRRNCIFHAYVDGYSHQEIAQKIGAPLGTVKAWIKRSL
TALRECMG
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
ttgtcctcgcacgaatctctctttgattacgaagcaacgttgcaggcctgcgctcgcggt
gacaagcaggccttgcagcgtctttatcaacaggaaagcgcgcggctgctcggcgtcgct
cagcggctggtgcgtgaccgggcgctggctgaagacatcgtgcatgacgcattcctgaaa
atctggagccacgcggccagcttcgacgcggcgcgcggttcggcgcgtggctggatattc
agcgtgacccggcatcttgcgctgaacacgctgcgcaacacggcgcgcgaggtacgtgtc
gaggatgacggcagcgacgatcatcacgaacaggcaaccctggaaggctggcaggaaacc
ggggatgctttcgattggcgggtcaatccaggacggatgacttcatgcatggagcaactc
gagccggtacgccgaaactgtatctttcacgcttacgtagacggctattcgcatcaggaa
atcgcgcagaagatcggcgcgccattgggtacggtcaaagcctggatcaagcgcagcctg
acggctttgcgggagtgcatgggatga
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