Pseudomonas amygdali: BKM19_028635
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Entry
BKM19_028635 CDS
T05354
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg00521
Streptomycin biosynthesis
pamg00523
Polyketide sugar unit biosynthesis
pamg00525
Acarbose and validamycin biosynthesis
pamg00541
O-Antigen nucleotide sugar biosynthesis
pamg01100
Metabolic pathways
pamg01110
Biosynthesis of secondary metabolites
pamg01250
Biosynthesis of nucleotide sugars
Module
pamg_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
BKM19_028635 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
BKM19_028635 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
BKM19_028635 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
BKM19_028635 (rfbB)
00525 Acarbose and validamycin biosynthesis
BKM19_028635 (rfbB)
Enzymes [BR:
pamg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
BKM19_028635 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
adh_short
KR
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
AVB17574
UniProt:
A0A2G4DBT6
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Position
5858903..5859985
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AA seq
360 aa
AA seq
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MRILVTGGAGFIGSALIRHLINNTEHEVLNFDKLTYAGNLESLQSIATDTRYEFVQADIC
DQARVSAVLERFAPQAIMHLAAESHVDRSIDGPAEFIQTNIVGTYSLLEATRAWWLKLPE
AQRQAFRFHHISTDEVYGDLHGVDDLFTETTPYAPSSPYSASKAASDHLVGAWHRTYGLP
VVVTNCSNNYGPFHFPEKLIPLVILNALAGKPLPVYGNGLQVRDWLYVEDHARALLKVVT
EGEVGETYNIGGHNEQKNIDVVRGICALLNELAPQHPAGIAQYSDLITYVVDRPGHDQRY
AIDASKIDNDLGWTPEETFESGLRKTVQWYLDNLDWCRRVQDGSYQGERLGFTDPKDLIA
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatactcgttaccgggggcgcaggtttcatcggctctgcactgatccgccacctg
ataaacaacaccgaacacgaagtgctgaacttcgacaaattgacctacgcgggcaacctt
gaatcgttgcagtccattgcgaccgacacgcgctatgagttcgtgcaggcggatatctgc
gatcaggcccgcgtcagtgcggtgctcgaacgctttgcgccgcaggcgatcatgcacctg
gcggctgagtcccacgtcgaccgctccatcgatggcccggccgagttcatccagaccaac
atcgtcggcacctatagcctgctggaagccacgcgcgcctggtggctgaaattgccggaa
gcgcagcgccaggcgttccgcttccaccatatctccactgatgaggtatatggcgacctg
cacggtgtcgatgatctgttcaccgaaaccacgccgtatgcgcccagctcaccttactcg
gcaagcaaggctgcgtccgaccacctggtgggcgcctggcaccgcacctatggcctgcct
gtcgtggtaaccaactgttctaacaactacgggccgttccactttcccgaaaagctcatc
ccgctggtgattctcaacgccctggcgggcaagccgctgccggtgtacggcaatggcctg
caagtgcgcgactggctgtatgtcgaggatcacgcacgagcactgctcaaggtcgtgacc
gaaggtgaagtcggcgagacgtacaacatcggcggtcataacgagcagaaaaacatcgac
gtcgtccgcggtatctgtgcgctgctcaatgagctggccccgcagcatccggcgggcatc
gcgcaatacagcgacctgatcacctacgtggttgaccgtccgggccacgaccagcgctat
gccatcgatgccagcaaaatcgacaacgacctgggctggacgcccgaagagaccttcgag
tccgggctgcgcaagacggtgcagtggtatctggacaacctggactggtgccgcagggtt
caggacggcagttatcagggcgaacgactgggtttcaccgacccaaaggacctgattgcc
tga
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