KEGG   Paracoccus aminovorans: pAMV3p0281
Entry
pAMV3p0281        CDS       T05468                                 
Symbol
ykoU2
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pamn  Paracoccus aminovorans
Pathway
pamn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pamn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    pAMV3p0281 (ykoU2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pamn03400]
    pAMV3p0281 (ykoU2)
Enzymes [BR:pamn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     pAMV3p0281 (ykoU2)
DNA repair and recombination proteins [BR:pamn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     pAMV3p0281 (ykoU2)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: CQR84226
LinkDB
Position
IV:complement(327392..329941)
AA seq 849 aa
MALETYREKRDFSATPEPRGGRRRRTGHAFVIQKHAATRLHYDFRLELDGVLKSWAVAKG
PSLVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVILWDRGTWTPEGDPHQAYAKGH
LEFTLHGEKLGGRWHLVRMRGKPREKRENWLLIKGEDDFARGEDAPDILEERPESVKTGR
VIADVAGEAPGWSSKTGRIRKTSARAAKTPEPTPDPRPSPDPPEPAQVKGARKAAMPGFV
PPMLATLVSAAPQGDRWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTARFGKAVPQALR
DLPVGSAILDGELVVETDAGASDFSALQADLSAGRDDRFAFYAFDLLYLDGYDLRGAALV
ERKALLAQLLGAEGGPLRYSGHFDESGALVLRHACRLSLEGIVSKLRDGPYRTGRGKSWV
KSKCSARQEFVVAGYVPSSVSRRAIGSLILGVYGDGGLEHVGRVGTGFSAAVAEDLFRRL
ERLRIPESPFAAPLTAEEARQARFVRPELVAEVEFRAWTADGHLRHAAFRGIREDKQPEE
IVRETAKPAAKVPAPQRRRVRLTHPDRIYWPAEGVTKEGLADYYAEVWRHISPWITGRPL
ALLRCPNGIEGEKFFQKHAWKGISPHVVQVQDPKDPQGEPLIAIEDLDGLMGLVQSATLE
IHPWGSTLADWERPDLITMDLDPGEAVEWSAVIAAARELRRRFEDHGLSAFVKTSGGKGL
HVVAPLRPQAEWPAVKAFTKAMADAMAADDPDRYVSTISKAKRRGKILIDYLRNQRGATA
VAAYSTRARPGAAVSAPLRWEELDEGIGPAWFTIQNMPTRLATLAADPWEGFRAAAVPLK
APKTGRKKA
NT seq 2550 nt   +upstreamnt  +downstreamnt
atggcgcttgaaacctatcgcgagaagcgggatttttcggccacgcccgagccccgcggc
ggacggcggcgcaggacaggccatgccttcgtgatccagaaacatgccgccacccgactg
cattacgactttcggctggagctggacggcgtgctgaaaagctgggccgtcgccaagggt
cccagcctggtccctggcgaaaagcgcctggcggtgcatgtcgaggaccacccgctggaa
tacggcgatttcgagggcaccatcccgaaaggcgaatacggcggcggcaccgttattctt
tgggaccgcggcacttggacgcccgagggcgatccgcatcaggcctatgccaagggacat
ctggaattcacccttcacggcgaaaagctgggcgggcgctggcatctggtccgcatgcgc
ggcaagccgcgcgaaaaacgcgagaactggctgctgatcaagggcgaagacgatttcgcc
cgcggcgaggacgcgcccgacatcctggaagagcggccggaatcggtcaagaccggacgg
gtgatcgccgatgtcgccggcgaggcaccgggctggtcctcgaagaccgggcgtatccgc
aagacgtcggcccgggctgcaaagactcccgagccgacgcccgatcctcgcccaagcccg
gacccacccgagccggcacaggtcaagggcgcccgcaaggcggcgatgccgggcttcgtc
ccgccgatgctggccacgctggtctcggccgcgccgcagggcgaccgctggctgcacgag
atcaagttcgacggctatcgcctgcaggcccgcatcgaggccgggcgggtcaagctgctg
acccgcagcgggctggactggaccgcgcgcttcggcaaggcggtgccgcaggcgctgcgc
gacctgccggtcgggtccgcgatcctcgacggcgagttggtggtcgagaccgacgccggc
gcctcggatttctcggccctgcaggccgatctcagcgccgggcgcgacgaccgcttcgcc
ttctacgccttcgacctgctctatctggacggctacgacctgcgcggggcggcgctggtc
gagcgcaaggcgctgctggcgcagttgctgggcgcagagggcgggccgttgcgctacagc
ggccatttcgacgaaagcggcgccctggtgctgcgccacgcctgccggctgagcctggag
gggatcgtgtcgaaactgcgcgacggcccctatcggaccgggcgcggcaagtcctgggtc
aagtcgaaatgctcggcccggcaggagttcgtggtcgcgggctatgtgccctcctcggtc
tcgcgcagggccatcggctcgctgatcctgggcgtctatggggacggcgggctggagcat
gtcggccgggtcggcaccggtttttccgccgccgtggccgaggacctgttccgccgcctg
gaacggctgcgcatccccgaaagcccgttcgccgcgcccctgaccgccgaagaggcgcgg
caggcccgtttcgtgcgccccgaactggtggccgaggtcgagttccgcgcctggaccgcc
gacggccacctgcgtcacgccgcctttcgcggcatccgcgaggacaagcaaccggaggag
atcgtgcgcgaaaccgccaagccggccgccaaggtccccgccccccagcgccgccgggtg
cggctgacccatcccgaccggatctattggcccgccgaaggcgtcaccaaggaagggctc
gccgattattacgccgaggtctggcgccatatctccccctggatcaccggccgcccgctg
gccctgctgcgctgcccgaacggcatcgagggcgagaagttcttccagaagcacgcctgg
aagggcatcagcccgcatgtcgtgcaggtgcaggaccccaaggatccccagggcgagccg
ctgatcgcgatcgaggacctggacgggctgatggggctggtgcaatccgcgacgctggag
atccacccctggggctcgaccctggccgattgggaacggccggacctgatcaccatggac
ctggacccgggcgaggcggtggagtggtcggcggtcatcgccgcggcgcgcgaattgcgc
cggcggttcgaggatcacgggctttccgccttcgtcaagacctcgggcggcaaggggctg
catgtcgtggcgccgctgcggccgcaggcggaatggccggcggtcaaggccttcaccaag
gccatggccgatgccatggcggcggacgacccggaccgctatgtatcgaccatcagcaag
gccaagcgccgcggcaagatcctgatcgactatctgcgcaaccagcgcggcgccaccgcg
gtcgccgcctattccacccgcgcccggcctggcgccgccgtttcggccccgctgcgctgg
gaggaactggacgagggcatcggccccgcctggttcaccatccagaacatgcccacccgg
ctggccacgctggccgccgacccctgggagggctttcgcgccgccgccgtgccgctgaag
gcgccgaaaaccgggcggaagaaagcctag

DBGET integrated database retrieval system