Paracoccus aminovorans: pAMV3p0281
Help
Entry
pAMV3p0281 CDS
T05468
Symbol
ykoU2
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pamn
Paracoccus aminovorans
Pathway
pamn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pamn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
pAMV3p0281 (ykoU2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamn03400
]
pAMV3p0281 (ykoU2)
Enzymes [BR:
pamn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
pAMV3p0281 (ykoU2)
DNA repair and recombination proteins [BR:
pamn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
pAMV3p0281 (ykoU2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CQR84226
LinkDB
All DBs
Position
IV:complement(327392..329941)
Genome browser
AA seq
849 aa
AA seq
DB search
MALETYREKRDFSATPEPRGGRRRRTGHAFVIQKHAATRLHYDFRLELDGVLKSWAVAKG
PSLVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVILWDRGTWTPEGDPHQAYAKGH
LEFTLHGEKLGGRWHLVRMRGKPREKRENWLLIKGEDDFARGEDAPDILEERPESVKTGR
VIADVAGEAPGWSSKTGRIRKTSARAAKTPEPTPDPRPSPDPPEPAQVKGARKAAMPGFV
PPMLATLVSAAPQGDRWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTARFGKAVPQALR
DLPVGSAILDGELVVETDAGASDFSALQADLSAGRDDRFAFYAFDLLYLDGYDLRGAALV
ERKALLAQLLGAEGGPLRYSGHFDESGALVLRHACRLSLEGIVSKLRDGPYRTGRGKSWV
KSKCSARQEFVVAGYVPSSVSRRAIGSLILGVYGDGGLEHVGRVGTGFSAAVAEDLFRRL
ERLRIPESPFAAPLTAEEARQARFVRPELVAEVEFRAWTADGHLRHAAFRGIREDKQPEE
IVRETAKPAAKVPAPQRRRVRLTHPDRIYWPAEGVTKEGLADYYAEVWRHISPWITGRPL
ALLRCPNGIEGEKFFQKHAWKGISPHVVQVQDPKDPQGEPLIAIEDLDGLMGLVQSATLE
IHPWGSTLADWERPDLITMDLDPGEAVEWSAVIAAARELRRRFEDHGLSAFVKTSGGKGL
HVVAPLRPQAEWPAVKAFTKAMADAMAADDPDRYVSTISKAKRRGKILIDYLRNQRGATA
VAAYSTRARPGAAVSAPLRWEELDEGIGPAWFTIQNMPTRLATLAADPWEGFRAAAVPLK
APKTGRKKA
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttgaaacctatcgcgagaagcgggatttttcggccacgcccgagccccgcggc
ggacggcggcgcaggacaggccatgccttcgtgatccagaaacatgccgccacccgactg
cattacgactttcggctggagctggacggcgtgctgaaaagctgggccgtcgccaagggt
cccagcctggtccctggcgaaaagcgcctggcggtgcatgtcgaggaccacccgctggaa
tacggcgatttcgagggcaccatcccgaaaggcgaatacggcggcggcaccgttattctt
tgggaccgcggcacttggacgcccgagggcgatccgcatcaggcctatgccaagggacat
ctggaattcacccttcacggcgaaaagctgggcgggcgctggcatctggtccgcatgcgc
ggcaagccgcgcgaaaaacgcgagaactggctgctgatcaagggcgaagacgatttcgcc
cgcggcgaggacgcgcccgacatcctggaagagcggccggaatcggtcaagaccggacgg
gtgatcgccgatgtcgccggcgaggcaccgggctggtcctcgaagaccgggcgtatccgc
aagacgtcggcccgggctgcaaagactcccgagccgacgcccgatcctcgcccaagcccg
gacccacccgagccggcacaggtcaagggcgcccgcaaggcggcgatgccgggcttcgtc
ccgccgatgctggccacgctggtctcggccgcgccgcagggcgaccgctggctgcacgag
atcaagttcgacggctatcgcctgcaggcccgcatcgaggccgggcgggtcaagctgctg
acccgcagcgggctggactggaccgcgcgcttcggcaaggcggtgccgcaggcgctgcgc
gacctgccggtcgggtccgcgatcctcgacggcgagttggtggtcgagaccgacgccggc
gcctcggatttctcggccctgcaggccgatctcagcgccgggcgcgacgaccgcttcgcc
ttctacgccttcgacctgctctatctggacggctacgacctgcgcggggcggcgctggtc
gagcgcaaggcgctgctggcgcagttgctgggcgcagagggcgggccgttgcgctacagc
ggccatttcgacgaaagcggcgccctggtgctgcgccacgcctgccggctgagcctggag
gggatcgtgtcgaaactgcgcgacggcccctatcggaccgggcgcggcaagtcctgggtc
aagtcgaaatgctcggcccggcaggagttcgtggtcgcgggctatgtgccctcctcggtc
tcgcgcagggccatcggctcgctgatcctgggcgtctatggggacggcgggctggagcat
gtcggccgggtcggcaccggtttttccgccgccgtggccgaggacctgttccgccgcctg
gaacggctgcgcatccccgaaagcccgttcgccgcgcccctgaccgccgaagaggcgcgg
caggcccgtttcgtgcgccccgaactggtggccgaggtcgagttccgcgcctggaccgcc
gacggccacctgcgtcacgccgcctttcgcggcatccgcgaggacaagcaaccggaggag
atcgtgcgcgaaaccgccaagccggccgccaaggtccccgccccccagcgccgccgggtg
cggctgacccatcccgaccggatctattggcccgccgaaggcgtcaccaaggaagggctc
gccgattattacgccgaggtctggcgccatatctccccctggatcaccggccgcccgctg
gccctgctgcgctgcccgaacggcatcgagggcgagaagttcttccagaagcacgcctgg
aagggcatcagcccgcatgtcgtgcaggtgcaggaccccaaggatccccagggcgagccg
ctgatcgcgatcgaggacctggacgggctgatggggctggtgcaatccgcgacgctggag
atccacccctggggctcgaccctggccgattgggaacggccggacctgatcaccatggac
ctggacccgggcgaggcggtggagtggtcggcggtcatcgccgcggcgcgcgaattgcgc
cggcggttcgaggatcacgggctttccgccttcgtcaagacctcgggcggcaaggggctg
catgtcgtggcgccgctgcggccgcaggcggaatggccggcggtcaaggccttcaccaag
gccatggccgatgccatggcggcggacgacccggaccgctatgtatcgaccatcagcaag
gccaagcgccgcggcaagatcctgatcgactatctgcgcaaccagcgcggcgccaccgcg
gtcgccgcctattccacccgcgcccggcctggcgccgccgtttcggccccgctgcgctgg
gaggaactggacgagggcatcggccccgcctggttcaccatccagaacatgcccacccgg
ctggccacgctggccgccgacccctgggagggctttcgcgccgccgccgtgccgctgaag
gcgccgaaaaccgggcggaagaaagcctag
DBGET
integrated database retrieval system