Planococcus antarcticus: BBH88_02465
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Entry
BBH88_02465 CDS
T04428
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pana
Planococcus antarcticus
Pathway
pana03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBH88_02465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pana03021
]
BBH88_02465
03400 DNA repair and recombination proteins [BR:
pana03400
]
BBH88_02465
Enzymes [BR:
pana01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBH88_02465
Transcription machinery [BR:
pana03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBH88_02465
DNA repair and recombination proteins [BR:
pana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBH88_02465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ANU09271
UniProt:
A0A1C7DD86
LinkDB
All DBs
Position
126468..130073
Genome browser
AA seq
1201 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIDPADTPLEKKQLLSEKEYRAYRDKFGKKFQAAMGAEAIKRLLQ
EIDLERETDSLKEELKTAQGQRRTRAIKRLEVVESFRNSGNNPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKG
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGATFSGPEEVMIAYQTGHVHLHTRIAIQ
AGAVNNPTFTEEQNKMLLLTTVGKIIFNEILPKSFPYINEPTDFNLQVETPAKYFVATTT
DIRKHIEEAELVTPFKKKILGEIIAEVFKRFHITETSKMLDRMKSLGFKYSTQAGITVGV
ADIVVLPDKGEILVDAQENVDKVMKQFRRGLITEEERYARVISYWSNAKDIIQSKLMASL
DNLNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDAIVRENDCGTDRGLLVGALMEGTEVIEELD
ERIVGRHAKKTIRHPETKEIIVAKDELITQDLTRLILEAGIKEVTIRSAFTCNTKHGVCK
KCYGTNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEITGTVTEIEEIREGQKEVTIQGEVETRKYLAPYNARIKVQVDDAIVR
GEVLTDGSIDPKQLLQVKDVQAVQVYLLKEVQKVYRMQGVEIGDKHVEVMVRQMFRKVRV
IEAGDTELLPGSLLDIHQFTEANVKAVLEGNLPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIKIAQSEKAAKQEIVGTE
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaataattttgagtatatgaaaatcggattagcgtcacccgataaaatt
cgctcatggtcttatggagaagtcaaaaagccagaaacaatcaattaccgtacactaaaa
cctgaaaaagatgggttattctgtgaacgtattttcggtcctacaaaagactgggaatgc
cattgcggtaaatacaagcgtgtccgttataaaggtgttgtttgtgatcgttgtggcgtt
gaagtcacacgttcaaaagttcgccgcgaacgcatgggacacattgaactagcagctcct
gtttcacatatttggtatttcaaaggaatccctagccgtatgggacttatcttggatatg
tctccgcgttcacttgaagaagttatttacttcgcttcttatgtggtaatcgatcctgcg
gatacaccacttgaaaagaaacagcttctatctgagaaagaataccgtgcataccgcgat
aagtttggtaaaaaattccaagctgccatgggagcagaagcaatcaaacgtctattgcag
gaaattgatcttgagcgtgaaacagactctttgaaagaagaattgaaaacagctcaaggc
caacgccgtactcgcgcaattaaacgtcttgaagtggttgagtcattccgtaattcagga
aacaaccctgactggatgattcttgatgttcttcctgttatcccgcccgaacttcggccg
atggttcaattagatggaggccgctttgcgacttctgatttaaatgatctttatcgccgc
gtaatcaaccggaataaccgtttgaaacgtcttctggaccttggtgcaccgagtatcatt
gtacagaacgagaaacgtatgcttcaggaagctgttgatgctttgatcgataacggtcga
cgtggtcgtccggtcacaggacctggtaaccgtccattgaaatctctttctcatatgtta
aaaggtaagcaaggacgtttccgtcaaaaccttcttggtaaacgagtagattactcaggc
cgttcggttatcgtagttggacctaacctgaaaatgtaccaatgtggtttgccgaaagga
atggcaattgaattgttcaagccgttcgttatgaaagaattggttgaacgcggattggct
cataacattaagagtgcaaaacgcaaaatcgaacgtcttcattctgaagtttgggatgta
ctggaagatgttatcaaagagcatcctgttctattgaatcgagcaccaactcttcacaga
ttgggtattcaagcatttgaaccaaccttagttgaaggcaaagcaatccgtcttcacccg
cttgtatgtactgcatacaacgccgatttcgatggtgaccaaatggctgttcacgtacct
ttatcatccgaagcacaggcagaagcaagattattgatgcttgcagctcagaacattttg
aatccaaaagacggaaaacctgttgtaacaccatctcaggatatggttttagggaactat
tacttaacacttgagcgtaaaggtgctacaggagaaggggctactttctcaggacctgaa
gaagtaatgattgcttatcaaacaggccatgtgcacttgcatacacgtattgcgattcaa
gctggagctgttaataatccgacgttcacagaagaacaaaacaaaatgcttttattgact
actgtcggtaaaattattttcaatgaaattctgccgaagtcattcccttatattaatgag
ccgactgatttcaacttgcaggtggaaacaccagcgaaatacttcgttgctacaacgact
gatatccgtaagcatattgaagaagcggaacttgtaacaccattcaagaagaaaattctc
ggggaaatcattgcagaagtattcaaacgtttccatattacggaaacttcgaaaatgctt
gaccgaatgaagagccttggattcaaatactctacgcaagccggcatcactgttggcgta
gcagatatcgtagttcttccggacaagggagaaattctggttgatgcacaagaaaacgtt
gataaagtaatgaagcaattccgtcgcggattgattacagaagaagaacgatatgcacgc
gttatttcgtattggagcaatgcaaaagatatcatccagagcaaactaatggcatctctt
gataacttaaatccaatctttatgatgagtgattccggagcacgtggtaacgcatcaaac
tttacgcagcttgctggtatgcgcggattgatggccaacccggctgggcggatcatcgaa
cttccgattaaatcttccttccgtgaaggattgactgtactagaatatttcatctctact
cacggtgctcgtaaaggtcttgccgatacagcacttaaaacagccgattctggttatttg
actcgtcgtttggtagacgttgcacaagatgcaattgttcgcgaaaatgactgtggaacg
gacagaggcctgctggtaggggcgttgatggaaggaacagaagtgattgaagagcttgat
gagcgaatcgtcggccgtcatgctaagaaaacaattcgccatcctgaaacaaaagaaata
attgtagcaaaagacgaattgattacacaagatttgactcgccttattcttgaagcgggc
attaaagaagtaacaatccgctctgcgtttacatgtaatacgaaacacggcgtttgtaag
aaatgctacggtactaacttggcaactggagacgaagttgaagtaggcgaagcagtaggt
attattgccgctcaatcaatcggtgaaccaggaactcagcttacaatgcgtacattccac
acaggcggagtcgcaggagacgatattacacaaggtcttccgcgtattcaggaaatattt
gaatcacgtaacccgaaaggtcaggcagttatttcagaaattacaggtacagttactgaa
attgaagaaattcgcgaaggccagaaagaagtaacgattcaaggggaagtcgaaacacgt
aaatatttagctccatacaatgcgcgcatcaaggttcaagttgatgatgccatcgttcgg
ggcgaagtgttgacggatggttcaatcgatccaaagcaattgcttcaagtaaaagatgtt
caggctgttcaagtgtatctattgaaagaagttcaaaaagtataccgcatgcaaggggta
gaaatcggcgataagcacgtagaagttatggttcgtcaaatgttccgtaaagttcgtgta
attgaagccggcgatactgaattgctaccaggttcactattggatattcaccaatttact
gaagccaacgttaaagcagtgctggaaggcaacttgccagcgacaagccgtcctgtaatt
cttgggattacgaaagcgtcacttgaaacagaatcattcctatcagccgcatcattccaa
gaaacgactcgtgtcttaacggatgcagcgatcaaaggaaaacgtgatgagcttctagga
ttgaaagagaatgtcattatcggtaaacttgttccggctggaacaggaatgcagcgttac
cgtcaaattaaaattgctcaaagcgaaaaagcagcgaagcaggaaattgtcggtacagag
tcataa
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