Pandoraea sp. XY-2: DRB87_00015
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Entry
DRB87_00015 CDS
T06086
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pand
Pandoraea sp. XY-2
Brite
KEGG Orthology (KO) [BR:
pand00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pand03032
]
DRB87_00015 (gyrB)
03400 DNA repair and recombination proteins [BR:
pand03400
]
DRB87_00015 (gyrB)
Enzymes [BR:
pand01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DRB87_00015 (gyrB)
DNA replication proteins [BR:
pand03032
]
Prokaryotic type
DNA Topoisomerases
DRB87_00015 (gyrB)
DNA repair and recombination proteins [BR:
pand03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DRB87_00015 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QBC30061
LinkDB
All DBs
Position
3058..5535
Genome browser
AA seq
825 aa
AA seq
DB search
MSEQQKQADSGYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALA
GYCDDIHVIIHADNSISVTDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNSY
KVSGGLHGVGVSCVNALSTYLKLTVRRDGKKHFMEFHRGVPQNRELEVVNGVETSPLKLL
GDTDKRGTEVHFLADETIFGKVEFHYDILAKRMRELSFLNNGVRIRLTDLRTGKEDDFAF
GGGVKGFVEYINKTKTVLHPTIFHVTGERDGIGVEVAMQWNDSYNETVLCFTNNIPQRDG
GAHLTGLRAAMTRVINKYIDENELAKKAKVETTGDDMREGLTCVLSVKVPEPKFSSQTKD
KLVSSEVRAPVEEYVAKALDEFLQETPNDAKIICSKIVEAARARDAARKAREMTRRKGVL
DGVGLPGKLADCQEKDPALCEIYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARF
DKLISSEQIVTLITALGCGIGKDDYNIDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQV
PELIERGYVYIAQPPLYKVKHNKDERYIKDEGELAQYMLKLAMNNAELTPSTGAAPIAGD
ALGELTRSYQLADGVIDRLSRIYEASVLTAVTEGVEIQLDNEESAKRTAAALQAALSDDP
LAPEITITAVMEDVENAEPVASLRVERRHHGNVKLSVIDQGFLQTADYAQLQKTAETFKG
LIGDGATIRRGEKSQTVSNFKAAMKWLMADAERNVSKQRYKGLGEMNAAQLWDTTMDPTV
RRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagcaaaagcaggccgatagcggctatggtgcagcctccatccagatcctt
gaaggtctggaggctgtgcgcaagcgtcccggcatgtacattggcgacacgtcggacggc
acgggcctgcatcacctggtattcgaggtgctggacaactcgatcgacgaggcgcttgcc
ggttactgcgacgacatccacgtgatcattcacgcggacaattcgatttccgtgacggac
aacggtcgcggcattcccacgggtatcaagttcgacgacaagcacgagccgaagcgcagc
gcggcggaaatcgtgatgacggaactgcacgcgggcggcaagttcgaccagaacagctac
aaggtgtcgggcggtctgcacggtgtgggcgtgtcgtgcgtgaacgcgctgtccacgtac
ctgaagctcaccgtgcgtcgcgacggcaagaagcacttcatggagttccaccggggcgtg
ccgcagaaccgcgagcttgaggtggtcaacggcgttgagacgtcgccgctgaagctgctg
ggcgacaccgacaagcgcggcaccgaggttcacttcctcgcggacgaaacgatcttcggc
aaggtcgaatttcattacgacattctcgccaagcgtatgcgcgagctgtccttcctgaac
aacggtgtgcgtattcgcctgacggatctgcgcacgggcaaggaagacgatttcgcgttt
ggcggtggcgtgaagggtttcgtcgagtacatcaacaagacaaagaccgtactgcatccg
acgatcttccacgtgacgggcgagcgcgacggtatcggcgtggaagttgcaatgcagtgg
aacgacagctacaacgagacggtgctgtgcttcacgaacaacattccgcagcgtgacggc
ggcgcgcacttgaccggtctgcgtgcggcgatgacgcgcgtcatcaacaagtacattgac
gagaacgagctggcgaagaaggccaaggtcgagacgactggcgacgacatgcgcgagggt
ctgacgtgcgtgttgtcggtgaaggtgccggagccgaagttctcgtcgcagacgaaggac
aagctggtgtcgtcggaagtgcgtgcgccggtggaagagtacgtggcaaaggcgctcgac
gagttcttgcaagagacgccgaacgacgcgaagatcatttgctcgaagatcgttgaagcg
gcgcgtgcgcgcgatgcggcgcgcaaggcgcgtgaaatgacgcgacgcaagggcgtgctc
gacggcgtgggtctgccgggcaagttggcggactgtcaggagaaggatccggcgctgtgc
gagatctacgtggtcgagggcgactcggcgggcggatcggcgaagcaggggcgcgaccgt
aaattccaggcgattctgccgttgcgcggcaaggtgctgaacgttgagaaggcgcgattc
gacaagctgatttcgagcgagcagatcgtgacgctgattaccgcgttgggttgcggcatc
ggcaaggacgactacaacatcgacaagctgcgttatcaccgcatcatcatcatgaccgat
gctgacgtggacggcgcgcacatccgtacgctgttgctgacgttcttctaccgtcaggtg
cctgagctgatcgagcgtggttacgtgtacatcgcacaaccgccgctgtacaaggtcaag
cacaacaaggacgagcgttacatcaaggacgaaggcgagctggcgcagtacatgctgaag
ctggcgatgaacaatgccgagctgacgccgtcgacgggggcagcgccgattgctggcgat
gcgctgggcgagttgacgcgcagctaccagttggccgatggcgtgatcgatcgtctgagc
cggatttacgaggcgtcggtgctcacggcggtgacggaaggcgtggagatccagctagac
aacgaggaatcggcgaagcgcacggctgcggcgttgcaggcggcgctgagcgacgatccg
ttggcaccggagatcacgattacggcggtgatggaagacgtcgagaatgcggagccggtg
gcgtcattgcgcgtggaacgtcgtcatcatggcaacgtgaagctgagcgtgatcgaccag
ggcttcctgcaaacggcggactatgcgcagttgcagaagacggcggagacgttcaagggc
ttgatcggtgacggcgcgacgattcgacgtggcgagaagtcacagacggtgtcgaacttc
aaggccgcgatgaagtggctgatggcggatgcggagcgcaacgtctcgaagcagcgctac
aagggcctgggcgagatgaacgcggcgcaactgtgggacaccacgatggacccgaccgtc
cgccgcctgctgcgcgtgcagatcgaagacgcgatcgccgcggacgggatcttcaccacg
ctgatgggggatgatgttgagccgcgtcgcgcgtttattgagtcgaatgcgttgagggct
ggaaatattgatgtttga
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