Pantoea sp. PSNIH2: PSNIH2_10310
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Entry
PSNIH2_10310 CDS
T03514
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
panp
Pantoea sp. PSNIH2
Pathway
panp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH2_10310 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panp03019
]
PSNIH2_10310 (rne)
03009 Ribosome biogenesis [BR:
panp03009
]
PSNIH2_10310 (rne)
Enzymes [BR:
panp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSNIH2_10310 (rne)
Messenger RNA biogenesis [BR:
panp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSNIH2_10310 (rne)
Ribosome biogenesis [BR:
panp03009
]
Prokaryotic type
rRNA processing factors
PSNIH2_10310 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIX74134
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All DBs
Position
2227850..2231197
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AA seq
1115 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRDAVSAIEKRQGGVKAIIVPNDQME
TPHYSVLRVRSGEETQTLSYHLPKLHEAEMALPSEDEHAERRRPEQPALAAFVMPDAPPA
PQEALVSEKTAPAPAAAKAPAAEPAAQTGFIGRLFGGLKKLFAADAPAPTAVAEKPQEEE
QQSSEASTQPRERRNNNNRRNGNNNNRRNRDRNGETAQQPAREGRDTRENRETREEPRRN
NKRQQPNAEVRDDRQNVLSDEARAQREEQQQQRREQRAERQRRRQEERRQQQEAAKAAAQ
QEEQQAAVPVESEDESAVEERVQVMPRRKPRQLSQKVRVESAARAAERMAEEAKPSNVEP
VEPQPTEPQTHADEQEEQENRDNGNMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPI
ASGAASPEMASGKVWIRYPVAQTSNENTEATDVVNETPDYSREETAAAVALPAAASEAVA
EQQQPEQTVQYAEPEQIAAPIAPVDTHDTSAIDVPVNEEPSVIPAAAEARAEYVAAQAKP
VEEVSVAAQEEVAPAEIAPVAAQDEQQPSAIAENSAADVSEETAAQVEQVLNAPAIDAEE
TLPVTEPHAPVPARDEAPVAVATPSVVESATASQPSVMAGKFHASAPMTKAPAPAWQPET
PRHSDWVRPPFNFEGRGAAGGHSATHQATAPATKP
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcaacaggaggagttgcgtgttgcccttgtggat
ggacaacgtctgtacgacctggatatcgaaagccctggacacgaacagaaaaaggccaac
atctataaaggaaaaatcacccgcattgagcccagtctggaagcggcttttgttgattac
ggcgctgaacgacacggtttcctaccgcttaaagaaatttcccgcgagtatttccccgcc
agctacaacgcccatggtcgccccaacattaaagatgtgttgcgcgaaggccaggaagtc
attgttcagattgataaagaagaacgcggcaataaaggcgctgcgctgactacctttatc
agcctggcgggcagctatctggtgctgatgccgaacaacccgcgcgcgggcggtatctct
cgccgtatcgaaggcgacgatcgcaccgagctgaaagaggcgctctcgtctctggaactg
ccggacggcatgggattgatcgtacgcaccgcaggcgtcggcaaatccgccgaagcgttg
cagtgggatctgagcttccgcctgaaacactgggaagcgatcaaaaaagcggcggaaaat
cgccccgcgccgttcctgatccatcaggaaagcaacgtcatcgtgcgtgccttccgcgac
tatctgcgtcctgacatcggcgaaatcctgatcgacaacccgaaagtgctggagctggcg
cgccagcatatcgccgcgctcggccgtcccgatttcagcagcaaaatcaagctctacacc
ggtgagatcccgctgttcagccactatcagatcgaatcgcaaatcgaatccgctttccag
cgtgaagtgcgcctgccctccggcggctcgattgtgatcgacagcaccgaggcgttaacc
gccattgatatcaactcggcgcgcgccacgcgcggcggcgatatcgaagagaccgcgttc
aacactaacctcgaagcggccgatgagatcgcccgccagctgcgcctgcgcgacctgggc
ggcctgatcgttatcgactttatcgatatgacgccggtgcgccatcagcgcgcggtggaa
aaccgtctgcgcgaagcggtgcgtcaggatcgcgcgcgcattcaaattagccatatttcg
cgtttcggcctgctggagatgtcgcgtcagcgcctcagcccgtcgctgggcgaatcaagc
catcatgtctgtccgcgctgtagcggcaccggcaccatccgcgataacgaatccctgtcg
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagtgcac
gccatcgtgccggtgccgatcgcctcttacctgcttaacgaaaaacgtgacgctgtcagc
gctattgaaaaacgtcagggcggcgtaaaagcgattatcgtgccgaacgatcagatggaa
acgccgcactactccgtgctgcgcgtccgcagcggcgaagaaacgcagaccctcagctac
catctgccgaaactgcacgaagcggaaatggcgctgccgtctgaagatgagcatgctgaa
cgccgtcgtcctgagcagcccgcgctggccgcgtttgtcatgccggatgcgccgcctgcg
ccgcaggaagccctggttagcgagaaaacagcgccagccccggccgctgcgaaagcgcct
gccgccgaacccgctgcgcaaaccggcttcatcggccgtctgtttggcggcctgaaaaaa
ctgttcgccgccgacgcccctgctccgaccgccgtcgctgaaaagccgcaggaagaggaa
cagcagagcagcgaagcgtcaacgcagccgcgcgagcgccgcaacaataacaatcgtcgc
aacggcaataacaataaccgtcgcaaccgcgatcgcaatggagagaccgcgcagcagcca
gcgcgtgaaggccgtgatacgcgcgaaaaccgcgaaacgcgtgaagagccgcgtcgcaac
aacaaacgtcagcagccgaacgccgaagtgcgtgatgaccgccagaacgttctgagcgac
gaagcgcgcgcccagcgcgaagagcagcagcaacagcgccgcgaacagcgcgccgagcgc
cagcgtcgccgtcaggaagagcgtcgtcagcagcaggaagccgccaaagccgccgcgcaa
caggaagaacagcaggccgccgtcccggttgaaagcgaagatgaaagcgcagtggaagaa
cgtgtgcaggtcatgccgcgtcgtaagccgcgtcagctgtcgcagaaagtccgtgtagaa
agcgccgcgagagccgccgagcggatggccgaagaagcgaagccgtccaacgttgaaccg
gttgagccgcagccgacagagccgcagacgcacgctgatgagcaggaagaacaggaaaac
cgtgataacggcaatatgccgcgtcgttcacgccgttctccgcgtcacctgcgcgtgagc
ggccagcgtcgtcgtcgttaccgtgacgagcgttacccgacgcagtctccgatgccgatc
gcttctggcgccgcatcgccggaaatggcttcaggcaaggtctggattcgctacccggtc
gcgcagaccagtaacgaaaacacggaagcgaccgacgtcgtaaatgagacgccggactac
agccgcgaagagaccgccgccgccgtagcgctgcctgccgccgccagcgaagccgttgct
gaacagcagcagccggagcaaacggtacagtacgccgagcctgagcagatcgccgcgccg
atcgcgccggttgatacgcacgatacctccgccattgatgtgccggtgaacgaagaacct
tccgtaatcccggccgccgctgaagcgcgcgctgaatatgtcgccgcgcaggcgaaaccg
gttgaggaagtcagcgtcgccgctcaggaagaggttgcgcctgcggaaatcgcgccagtc
gctgcgcaggatgaacagcagcccagcgccattgctgaaaacagcgccgccgacgtcagc
gaagaaaccgccgcgcaggtcgagcaggtgctgaacgcgcccgctatcgatgcggaagaa
acgctgccggtgaccgagccgcatgcgccggtgccggcgcgcgatgaagcgcctgtcgcg
gttgccacgccgtctgtcgttgaaagcgcaacggcaagccagccttccgtcatggccggt
aagtttcatgccagcgcgccgatgactaaagcacctgcgccagcctggcagccggaaacg
ccgcgtcacagcgactgggtgcgtcctcccttcaactttgaaggcagaggcgcagccggc
ggccacagcgccacgcatcaggcgacggctccggccaccaagccctga
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