Pantoea sp. PSNIH2: PSNIH2_11675
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Entry
PSNIH2_11675 CDS
T03514
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
panp
Pantoea sp. PSNIH2
Pathway
panp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH2_11675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panp03019
]
PSNIH2_11675
Enzymes [BR:
panp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSNIH2_11675
Messenger RNA biogenesis [BR:
panp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSNIH2_11675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIX74370
LinkDB
All DBs
Position
complement(2534796..2536292)
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AA seq
498 aa
AA seq
DB search
MSFDSLGLNADILRAVAEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPIL
QLLSAKAQPAKGRRPVRALILTPTRELAAQIGENVSDYSKYLNLRSLVVFGGVSINPQMM
KLRGGVDLLVATPGRLLDLAQQNAVDLSHVEMLVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKTLAEKLLDNPSQVEVARRNTASEQVTQHVHFVDKKRKRELLSLMI
GQGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKSGHIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKREIPRMALPGFEPDPNIKAEPIVNGRQQRGGNGGGGRSQGGRGQSARGGQGGDRP
AGQRQSASGERQPRRTSGEGNAPRRSGEGNAPRRPSGEGAPSRRLSGDRDGSQPRRPSGE
RSGQRSARPRSDKPAGNR
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggccttaacgccgatattttgcgtgccgttgccgagcaaggc
tatcgtgatcccacccccgtacagcgtcaggcgatccctgtggtattggaagggcgcgat
ctgatggccagcgcccaaaccggcaccggtaaaaccgccggttttaccctgccgatcctg
cagctgctgagcgccaaagcgcagccggcgaaaggccgtcgcccggtgcgcgcgctgatc
ttaaccccgacgcgtgaactggcggcgcagatcggcgaaaacgtcagcgactacagtaaa
tacctgaacctgcgttcgctggtggtattcggcggcgtcagcatcaatccgcagatgatg
aagctgcgcggcggcgtcgatctgctggtggcgacgccgggccgtctgctcgacctggcg
cagcaaaacgcggtcgatctctcccatgtggaaatgctggtgctggatgaagcggaccgc
atgctcgatatgggctttatccacgatatccgccgcgtgctggcgcgcctgccggcgaaa
cgccagaacctgctgttttccgccaccttctccgatgagatcaaaactcttgccgagaag
ctgctggataacccaagccaggtggaagtcgcgcgccgcaacaccgcctctgagcaggtg
acgcagcacgttcactttgtagataaaaagcgtaagcgggaactgttgtcgctgatgatc
ggtcagggcaactggcagcaggtgctggttttcacccgcaccaaacacggcgccaaccac
cttgctgaacagctcaataaagacggtatcaccgctgctgcgattcacggcaacaaaagc
cagggcgcgcgcacccgtgcgctgagcgacttcaaaagcggtcatattcgcgtgctggtg
gcgaccgacatcgccgcgcgcggcctggatatcgaagaactgccgcacgtggtgaactac
gagctgcccaacgtgccggaagattatgtacaccgtatcggtcgtaccggccgcgcggcg
gcaaccggcgaggcgctctcgctggtttgcgtggacgaacataaactgttgcgcgatatc
gaacgtttgctgaagcgtgaaattccgcgcatggcgctgccgggctttgagccggacccg
aacatcaaagcagagccgatcgttaacggtcgtcaacagcgcggcggcaacggcggcggc
ggtcgcagccagggcggacgcggtcagtccgcgcgcggcgggcagggcggcgatcgtccg
gcaggccagcgtcagagcgcgtccggcgaacgtcagccgcgccgcacctcaggcgaaggc
aacgcgccgcgccgcagcggtgaaggcaacgcaccgcgccgtccttccggcgaaggcgcg
ccgtcgcgtcgtctctccggcgatcgtgacggcagccagccgcgtcgtccttccggcgag
cgcagcggccagcgttcagcgcgtccgcgcagcgataagcctgccggcaatcgttaa
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