Pantoea sp. SO10: FCN45_10390
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Entry
FCN45_10390 CDS
T06053
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pans
Pantoea sp. SO10
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pans03032
]
FCN45_10390 (topA)
03400 DNA repair and recombination proteins [BR:
pans03400
]
FCN45_10390 (topA)
Enzymes [BR:
pans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FCN45_10390 (topA)
DNA replication proteins [BR:
pans03032
]
Prokaryotic type
DNA Topoisomerases
FCN45_10390 (topA)
DNA repair and recombination proteins [BR:
pans03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FCN45_10390 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
QCP59762
LinkDB
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Position
complement(2233037..2235634)
Genome browser
AA seq
865 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTARKSADGEKAKPGKKVK
KDEKAALVNRMGVDPWHGWEADYQILPGKEKVVAELKNLAADADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIRQAFDKPGELNIERVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREHEIKAFVPEEYWEIHADFATPKGADLAMQVTH
QNDKAFRPVNREQTHAAVAILQKARYEVLDREDKPTSSKPSAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSLDAVAMARGYVESSFGKKYLPEAPNTYASKEN
SQEAHEAIRPSDVNIVAEQLKDMEADAQKLYQLIWRQFVACQMVPAQYDSTTLTVGAAEF
KLKAKGRTLRFDGWTRVMPALRKNDEDLTLPPVDVGDMLDLKELMPSQHFTKPPARFSEA
SLVRELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLESNFRELMNY
DFTARMENSLDQVANNEAEWKAVLDSFFSDFSQQLDDAEKDPEEGGMQPNQMVLTSIDCP
TCSRPMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNVLEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPECDGYEIEQGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGDVAPPKEDPVPLPELQCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELQRFADRLPEKLKYLSEAPAADPEGNKTMVRFSRKTKQQYV
SSEKDGKATGWSMFYIDGKWQEAKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgtaatcgttgagtccccggcaaaggccaaaacaatcaataaatac
ctcggtaatgactacgtggtgaaatccagtgtcggtcatatccgtgatttgccgaccagc
ggttcaactgcccgtaaaagtgccgacggggaaaaagcgaaacctggaaaaaaggttaaa
aaggatgagaaagccgcactcgtaaaccgcatgggtgtggatccctggcatggttgggaa
gcggattatcaaattctgccgggcaaagaaaaagttgtcgctgagctgaaaaacctggct
gccgatgcagaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtgatcggtggggacgataagcgctttagccgcgtagtatttaac
gaaattaccaagaatgcgattcgtcaggcgtttgacaagcctggcgagcttaatattgaa
cgtgtcaacgcacagcaagcgcgccgctttatggatcgcgtggtgggttacatggtgtcg
ccactgctgtggaagaaaattgcccgcggcctgtcagccggtcgcgttcagtcggttgcg
gtacgtctggttgttgagcgggagcacgaaatcaaagccttcgtgccagaagagtactgg
gaaatccatgctgatttcgccacgccgaaaggcgccgatctggccatgcaggtgacgcat
cagaatgacaaagcgttccgtccggtcaatcgtgagcaaactcacgcggcggtagcgatt
ttgcagaaagcgcgttacgaagtgctggatcgtgaagacaagccgaccagcagcaagcct
tctgcaccttttattacctcaacgctgcaacaggcggcgagtacgcgtttgggcttcggc
gtgaagaagaccatgatgatggcgcagcgtttgtatgaagcgggccacatcacctatatg
cgtaccgactccaccaacctgagcctggatgccgtggcgatggcgcgcggttatgttgag
agcagcttcggtaaaaagtatctgccagaagcgccgaatacctatgccagcaaagagaac
tcacaggaagcgcacgaagcgattcgtccttctgacgtgaatatcgtggctgagcagttg
aaagatatggaagctgatgcgcagaaactttatcagctgatttggcgccagtttgttgcc
tgccagatggttccggctcagtacgactccaccacgctgaccgtgggcgcggctgaattc
aaattgaaagccaaaggccgcacgctgcgtttcgatggctggacgcgcgtgatgcctgcg
ctgcgtaaaaatgatgaagatctgacgctcccgccggtagatgttggcgacatgctggat
cttaaagagctgatgccaagccagcacttcaccaaaccgccggcgcgcttcagtgaagca
tccctggtgcgtgagctggaaaaacgtggcattggtcgtccatcaacgtatgcctcgatt
atctccaccattcaggatcgtggttacgtgcgtgttgagaaccgccgtttctacgctgaa
aaaatgggtgaaattgttaccgaccgtctggagtctaatttccgcgagctgatgaactat
gacttcaccgcgcgcatggaaaatagcctcgatcaggtggcgaataatgaagccgaatgg
aaagcggtactcgactccttcttcagtgatttcagccaacagttagatgatgctgagaaa
gatccggaagagggcggcatgcagccgaaccagatggtgttgacgtcaattgattgtcca
acctgtagccgcccgatggggattcgcactgccagtaccggcgtgttcctgggttgctcg
ggttatgctttgccgccgaaagagcgttgcaagcagaccatcaacttgatcccggaaaat
gaagtgctcaacgtgctggaaggcgatgatgctgaaaccaatgcgctgcgtgctcgtcgt
cgttgccagaagtgtggcaccgcgatggacagctatctgatcgataaccagcgcaagtta
cacgtctgcggtaataacccagagtgcgacggctacgagattgagcagggcgaattccgc
atcaagggctacgacggtccgattgttgagtgcgagaagtgtggttctgaaatgcatctg
aaaatgggtcgtttcggtaagtacatggcgtgtaccaacgacgagtgcaaaaacacccgt
aagattctgcgtaacggtgatgtcgcgccgccaaaagaagatccggtgccgctgccagaa
ttgcagtgtgaaaagtcggatgcttactttgtgttgcgtgatggtgcagcgggcgtgttc
cttgccgctaataccttcccgaaatcacgtgaaacgcgcgcgccgctggtggaagagctg
caacgctttgccgaccgcctgccagaaaagctgaaatatctgtcagaagcgccagccgcc
gatccggaagggaataagacgatggtacgtttcagtcgcaagaccaaacagcaatacgtc
tcttccgaaaaagatggtaaagccactggctggtcaatgttctatattgatggcaaatgg
caggaagcgaaaaagtaa
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