KEGG   Pandoraea apista: SG18_07530
Entry
SG18_07530        CDS       T03588                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
papi  Pandoraea apista
Pathway
papi02020  Two-component system
Brite
KEGG Orthology (KO) [BR:papi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    SG18_07530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:papi03021]
    SG18_07530
Transcription machinery [BR:papi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     SG18_07530
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 HTH_23 HTH_20 HTH_24 GerE HTH_IclR HTH_40 HTH_10 HTH_29 HTH_5 HTH_28 HTH_Tnp_ISL3 TnsD HTH_38 HTH_7 HTH_11
Other DBs
NCBI-ProteinID: AJE98072
UniProt: A0A5E5NYD6
LinkDB
Position
complement(3612721..3613236)
AA seq 171 aa
MPADDTLPHDTTLRGLYNDHHGWLKGWLHRKTGCSHRAADLAHDTFVRLLERETPRMLAS
PRAFLTTVAQRVLYNHWRREQIERAYLDALAQQPEALVPSPEERAIVLETLLEIDRCLDG
LPSLVKRAFLLAQLDGMTHLEIAAELGISLSTVKRHLVRAGTQCFFTMGAA
NT seq 516 nt   +upstreamnt  +downstreamnt
atgcccgccgacgacacgctgccgcacgacaccacgctgcggggactttacaacgaccat
cacggctggctaaagggctggctgcatcgcaagaccggctgttcgcaccgcgcagccgat
ctcgcgcacgacacgtttgtgcgtctgctcgagcgcgaaacaccgcgcatgctggcctcg
ccgcgcgccttcctcacgaccgttgcccaacgcgttctctacaaccattggcggcgcgag
caaatcgaacgcgcttatctcgacgctctcgcgcaacagccggaggcgcttgtgccgtca
cccgaagagcgcgccatcgtactcgagacgctgctcgagatcgaccgttgcctcgacggt
ttgccgtccctcgtcaaacgcgccttcctgctggcgcaactcgacggaatgacccatctg
gagattgcggccgaactcggcatttcgctctccacggtgaagcggcatctcgtgcgcgcc
ggtacgcaatgcttcttcacgatgggcgccgcatga

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