Pandoraea apista: SG18_09365
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Entry
SG18_09365 CDS
T03588
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
papi
Pandoraea apista
Pathway
papi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SG18_09365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
papi03400
]
SG18_09365
DNA repair and recombination proteins [BR:
papi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SG18_09365
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SG18_09365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
AAA_16
AAA_21
SMC_N
nSTAND1
RsgA_GTPase
AAA_23
AAA_22
AAA_33
AAA_25
NACHT
AAA_18
Viral_helicase1
UvrA_DNA-bind
DnaJ_CXXCXGXG
DUF4350
SbcC_Walker_B
RNA12
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AJE98336
LinkDB
All DBs
Position
4078158..4084088
Genome browser
AA seq
1976 aa
AA seq
DB search
MDKSSPKSDPSASHAIRIRGARQHNLKNLDVDLQTGEMTVVTGPSGSGKSSLVFDTLFAE
GQRRYVETFSAYARQFLDRMDRPQVDHVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHL
KLLFARAAALFDRETAQPVRHDTPETIYADLMARTANGDPRLVVTFPVELPGSVTADEVE
QWLSASGYTRVQAEREVTTAEGSRKVLDVVADRFRLQNTEKVRAMEAIESSLKRGRGRVN
VYVLADEGEPDIWRYSQDLHCPDSDLHYADPQPALFSFNSAYGACEACRGFGRVIGVDLG
LVIPDERKTLRGGAVKTIQTPAWKEIQDDLLEYAGKAGIPRDTPWSKLSPEHREWVIEGD
ADWKGEWNKQWYGIRRFFGYLESKAYKMHIRVLLSKYRSYTTCETCGGARLKTEGLLWRL
GSKENADAVLPPAQRFMPRGVSWSREQLEALPGLTMHDLMLMPISRVRQFFDSLTLPSSL
LDDALKLLQEEVGTRLKYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFV
LDEPSIGLHPRDMDRIVAAMHRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGERGGQI
VFDGTPEEVRHADTLTGSYLGGRKHVANASNWRARPVEADTPRLTLSGVREHNLKHVNVE
IPLGRLVCVTGVSGSGKSTLVQDVLNPALARHFGDPTEAPGAHDELLGAEQLSGVVFVDQ
SPIGKTARSNPASYVGAFDEIRKLFAAEPVALQRGYTASTFSFNSGNGRCPTCGGSGFEH
VEMQFLSDVYLRCPDCDGKRYRAEVLDVKIQRAVPGEAMRELSVSDVLELTVNEAVKLFS
SDRDVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAEAAQKKTASGQKVAHR
GRLFIFDEPTTGLHFDDIAKLMRAFGKLLDGGNSLLVIEHNLDVVRAADWIIDLGPEGGE
GGGEVLCAGTLAQVVACEGSHTGRALAEYERTVVAPGQAVAVAKSAGDPGMPLQTALRAA
RAHRKPAGGDDIRIVNAREHNLKSLDVAIPRGKFSVITGVSGSGKSTLAFDILFNEGQRR
YLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTTEVWHFLRLLY
VKLGIQHCIHDGAPVTAQSPDSIVAQLMRDRRGQHVGLLAPLVVGRKGIYTDLAKWAKAR
GHSHLRVDGVFLPVDPWPKLDRFREHTIELPVGDVVITPENEGLLRTLLAAALELGKGVM
HLLAPLDGLGDTMANEQPGEGVGEIEVFSVKRACPVCGTSYPDLDPRMFSFNSKHGWCST
CVGTGLALTREQREAFDDTVLNQDNRGREHSLPSEEQEPEGVGDQPCPDCHGARLNTVAR
AVTFDEHAISDVAQWTVSDVREWIQRLELRGRDASIARDLISEIQGRLEFLEEVGLGYLT
LDRAAPTLSGGESQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNGILLGALRKLGDQGN
TLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQGSVADLAAHPESLTGKFLAHPLLHP
IQPRREVIAPAKGVEAVPPNWLTVHGATLHNLKHVTASLPLSRLTAITGVSGSGKSTLAR
DVLMTNLLDAVGRSVLSSPAERRARKGTVRHAVKADGKPRATSEAAAEPRRPVVHAWHGC
ESVTGWETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRRLFADTLEARARGYAASRFSF
NTGEGRCPACEGQGVRTIGMSFLADVKVLCDVCHGQRFNAETLAVTWRGKSIGDVLTMEV
DEAVEFFASMPSIAHPLQLMQDVGLGYLTLGQPSPTLSGGEAQRIKLVTELTKVRDDVTR
RGQKSPHTLYVLDEPTVGLHMADVARLINVLHRLVNGGHTVVVIEHNLDVIAEADWIVDM
GPEGGKNGGAVVAATSPDALTEVAASHTGIALKPVLAHSAALTASTATSEEAATAK
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
gtggacaagtcatccccgaaatccgacccgtcggccagccacgccattcgcattcgcggc
gctcgccagcacaatctcaagaacctcgacgtcgatctgcagaccggcgagatgacggtc
gtgaccggcccatccggttccggcaagtcgagcctcgtcttcgacacgctgtttgccgag
ggccagcggcgctacgtcgaaaccttcagtgcgtacgcccgccagttcctcgaccgcatg
gatcgtccgcaggtcgatcatgtggaaggggtgccgccggccatcgccatcgatcagacg
aacccggtgcgcagctcgcgctcgacggtcggcacgatgaccgaactcaacgatcacctc
aaactgctgttcgcccgcgcggcggcgctgttcgatcgcgagacggcgcaaccggtgcgt
cacgacacgcccgagaccatctacgccgacctgatggcccgcactgccaacggcgatccg
cgtctggtcgtcaccttcccggtcgaactgccgggcagcgtgacggcggatgaggtcgag
caatggctctcggcatccggctatacgcgcgtgcaggccgagcgtgaagtcacaacggcg
gaaggctcgcgcaaggtgctcgatgtcgtcgccgaccggttccgcttgcagaacaccgag
aaagtgcgcgcgatggaagccatcgagtcgtcgctcaagcgcggccgcggccgcgtgaac
gtctacgtgctggccgacgaaggcgagcccgacatctggcgctactcgcaggatctgcac
tgtcccgacagcgatctgcattacgccgacccgcaaccggcgctcttctcgttcaactcc
gcctatggcgcatgcgaagcctgtcgcggtttcggccgggtgatcggtgtcgatctcggt
ctggtgattcccgacgagcgcaagacgttgcgcggtggtgcggtcaagaccattcagacg
cctgcgtggaaagagattcaggacgacctgctcgagtacgccggcaaagccggtattccg
cgcgacaccccctggtcgaaactctcgcccgagcatcgcgagtgggtcatcgaaggcgat
gccgactggaaaggcgagtggaacaagcagtggtacggcattcgccgcttcttcggctat
ctggagtcgaaggcgtacaagatgcacattcgcgtgctgctctcgaagtaccgcagctac
accacgtgcgagacgtgtggcggcgctcgcctgaagactgagggcttgctgtggcgtctg
ggctcgaaagagaacgccgacgccgtgctgccacctgcccagcgcttcatgccgcgcggc
gtgtcgtggtcgcgcgagcaactcgaagcattgccgggcctcaccatgcacgacctgatg
ctcatgccgatttcgcgtgtgcgtcagttcttcgattcgctcaccctgccctcaagcctg
ctcgacgacgccctcaaactgttgcaggaagaagtcggcacgcgtctgaagtatctgtgc
gatgtcggcatcggctatctcacgctcgatcgccagagccgcacgctctcgggtggcgaa
gtgcaacgtatcaatctgacgacggcgcttggcacgtcgctcgtcaacacgctcttcgtg
ctcgacgagccgagtatcggcctgcatccgcgcgacatggaccggatcgttgccgcaatg
caccgtctgcgcgacgccggcaatacgctcgtcgtggtcgagcatgacccggcggtcatg
cttgccgccgatcgggttatcgacatggggcccggaccgggcgagcgcggcgggcagatt
gtttttgacggcacgcccgaggaagtgcgtcatgccgacacgctgaccggcagttacctg
ggcgggcgcaagcatgtggcgaacgcctcgaactggcgcgcacgcccggtcgaggccgac
acgccgcgtctgacgctgagcggtgttcgcgagcacaacctcaagcatgtcaacgtcgag
attccgctcggccggctcgtgtgtgtgaccggtgtgtccggctccggcaaatcgacgctg
gtgcaggacgtgctgaatccggcattggcgcgtcactttggcgacccgaccgaggcgccg
ggcgcacacgatgaacttctcggcgccgaacaactgtcgggcgtggtgttcgtcgatcag
tcgcccatcggcaagacggcgcgctcgaatccggcgagctatgtcggcgcgttcgacgag
attcgcaagctgttcgctgccgagccggtggcgctgcaacgcggctacaccgcgagcacc
ttcagcttcaattccggcaatggacgttgcccgacctgcggcggttcgggcttcgagcac
gttgaaatgcagttcctgagcgatgtctatctgcgttgcccggattgcgacggcaagcgc
tatcgcgccgaagtgctcgatgtgaagattcagcgcgccgtgccgggtgaggcgatgcgc
gaattgagcgtctccgatgtgctcgagctgacggtcaacgaggctgtcaaactgttctcg
tcggatcgcgacgtgctgcgtgtccttcagccaatcgtggatgtgggtctggagtatgtg
aagctggggcagccggtgccgacgctctcgggcggcgaggcccagcgcctgaagctggcg
ggtttcctcgcggaagccgcgcagaagaagaccgcgagcggacagaaggtcgcgcatcgc
ggccgtctcttcattttcgacgagccgacgaccgggctgcacttcgacgacattgccaag
ctcatgcgcgcgttcggcaagttgctcgacggcggtaattcgctgctcgttatcgaacac
aacctcgatgtggtgcgcgctgcggactggatcatcgacctcggcccggaaggcggcgaa
gggggcggcgaagtgctgtgtgcgggcacgctcgcgcaggtggtcgcgtgtgaagggtcg
cataccggtcgcgccctggccgaatacgaacgcacggtggtcgcgccggggcaggccgtg
gcggtggccaaatccgcaggcgatccgggcatgccgttgcaaaccgcgctacgcgctgca
cgcgcgcaccgcaagccggcagggggcgacgacattcgtatcgtcaatgcccgcgagcac
aacctgaagtcgctcgacgtggcgattccgcgcggtaagttcagcgtgattaccggcgtt
tcggggtcgggcaaatcgacgctcgcgttcgacattctcttcaacgaagggcagcgtcgc
tacctcgaatcgctcaatgcctatgcgcgatccatcgtgcagcccgcagggcgcccggaa
gtcgatgccgtgtacggtattccgccgaccgtcgccatcgaacagcgcctgtcgcgcggc
gggcgcaagagtaccgttgcaaccaccacagaggtctggcacttcctgcgtctgctgtac
gtcaagcttggcattcagcactgtatccatgacggcgcgcctgtcacggcgcagagtccg
gattcgatcgtcgcgcaattgatgcgcgaccgtcgcggccagcatgtggggttgctcgcc
ccgctggtggtgggccgcaaggggatctataccgatctggcgaagtgggccaaggcacgc
ggacattcgcatttgcgagtggatggcgtgttcctgccggtcgacccttggccgaagctc
gaccgattccgcgaacacaccatcgaactgccggtgggcgatgtggtgatcacacccgag
aacgaagggctgctgcgcacgttgctggcggcggcgcttgaattgggcaagggcgtcatg
catttgcttgcgccgctcgacgggcttggcgacacgatggccaacgaacagccgggcgaa
ggcgtgggcgagatcgaggtgttctcggtcaagcgtgcgtgcccggtgtgcggcacgagt
tatcccgatctcgatcctcgcatgttctcgttcaacagcaagcatggctggtgttcgacg
tgcgtgggtacaggtcttgcgctcacgcgtgaacagcgcgaagccttcgacgacaccgta
ctcaatcaggacaatcgggggcgcgagcattcgctgccgtcggaagagcaggagccggaa
ggcgtgggcgatcagccgtgtccggactgtcacggcgcgcgcctcaatacggtcgctcgc
gctgtgacgttcgacgaacacgcgatctccgacgtcgcccagtggaccgtgagcgacgtg
cgcgaatggattcagcgactcgaacttcgcggccgcgacgcaagcattgcgcgcgatctg
atcagcgagattcaggggaggctggaatttctggaggaagtcgggctcggctacctcacg
ctggaccgcgcagcgccgacgctctctggcggcgagtcgcagcgcattcgtctggcggcg
caactgggcagcaacctgcaaggcgtttgctatgtgctggacgagccgaccatcggtttg
cacccgcgcgataacggcattctgctcggcgcgttgcgaaagctgggcgatcagggcaac
acgctggtcgtggtcgaacacgacgaggacacgattcgccgtgcggaccacatcatcgat
atcggcccgggcgcgggcaagcgcggcggtacgctcgtggctcagggcagcgtggccgat
ctggcggcgcatcccgagtcgcttaccggcaagttcctggcgcatccgttgctgcatccg
attcaaccgcgccgcgaggtgatcgcacccgccaagggtgtcgaggcagtaccgccgaac
tggctgacggtgcatggggcgacgctgcataacctgaagcatgtgacggcgtcgttgccg
ttatcgcggctcactgcgattaccggtgtttcggggtcgggcaaatcgacgctcgcacgc
gatgtgctgatgacgaatctgctcgatgcggtggggcgctcggtgttgtcgtcaccggcc
gagcgccgtgcccgcaaaggcacggtgcgtcacgccgtgaaggcagacggcaagccgcgt
gcgacctcggaggccgccgcagagccgcgccgtccggtggtgcacgcgtggcacggctgc
gagtcggtgaccggctgggagacgatcgatcgtgtgctcgaagtcgatcagacgcccatc
ggcaaaacaccgcgctcgtgtccagccacgtacatcggcttctgggacacgattcggcgt
ttgtttgccgatacgctggaagcccgagcgcggggttacgcagcgtcgcgattctcgttc
aatacgggcgaggggcgttgtcccgcgtgcgaagggcaaggcgtgcgcaccatcggcatg
agtttccttgccgacgtgaaggtgctttgcgatgtctgtcacggtcagcgcttcaacgcc
gagacgttggctgtcacctggcgcggcaagagcatcggcgacgtgctgacgatggaagtg
gacgaagccgtcgagttctttgcgtctatgccaagcatcgcgcatccgttgcaactgatg
caggacgttgggctcggctatctcacgctgggtcagccatcgccgacgctgtcgggcggc
gaagcgcagcgtatcaagctggtgacggagttgaccaaggtgcgtgacgacgtcacgcgt
cgcgggcagaaatcgccgcacaccctttacgtgcttgacgaaccgaccgttggtcttcac
atggctgacgtggcgcgacttatcaatgtcttgcaccggttggtgaatggcgggcatacc
gtcgtggtcatcgagcacaacctcgacgtgattgccgaagccgactggatcgtcgacatg
gggccggaaggcggcaagaacggtggggccgtggtggcggcaacctcacccgatgcgctg
accgaggtcgccgcaagtcataccggtattgcgctcaaaccggtgctcgcgcactccgcg
gccttgacggcatcgacagcgacgtcggaggaagctgccacggcgaagtag
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