KEGG   Pandoraea apista: SG18_09365
Entry
SG18_09365        CDS       T03588                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
papi  Pandoraea apista
Pathway
papi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:papi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SG18_09365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:papi03400]
    SG18_09365
DNA repair and recombination proteins [BR:papi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SG18_09365
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SG18_09365
SSDB
Motif
Pfam: ABC_tran UvrA_inter AAA_29 AAA_16 AAA_21 SMC_N nSTAND1 RsgA_GTPase AAA_23 AAA_22 AAA_33 AAA_25 NACHT AAA_18 Viral_helicase1 UvrA_DNA-bind DnaJ_CXXCXGXG DUF4350 SbcC_Walker_B RNA12 Anti-TRAP
Other DBs
NCBI-ProteinID: AJE98336
LinkDB
Position
4078158..4084088
AA seq 1976 aa
MDKSSPKSDPSASHAIRIRGARQHNLKNLDVDLQTGEMTVVTGPSGSGKSSLVFDTLFAE
GQRRYVETFSAYARQFLDRMDRPQVDHVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHL
KLLFARAAALFDRETAQPVRHDTPETIYADLMARTANGDPRLVVTFPVELPGSVTADEVE
QWLSASGYTRVQAEREVTTAEGSRKVLDVVADRFRLQNTEKVRAMEAIESSLKRGRGRVN
VYVLADEGEPDIWRYSQDLHCPDSDLHYADPQPALFSFNSAYGACEACRGFGRVIGVDLG
LVIPDERKTLRGGAVKTIQTPAWKEIQDDLLEYAGKAGIPRDTPWSKLSPEHREWVIEGD
ADWKGEWNKQWYGIRRFFGYLESKAYKMHIRVLLSKYRSYTTCETCGGARLKTEGLLWRL
GSKENADAVLPPAQRFMPRGVSWSREQLEALPGLTMHDLMLMPISRVRQFFDSLTLPSSL
LDDALKLLQEEVGTRLKYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFV
LDEPSIGLHPRDMDRIVAAMHRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGERGGQI
VFDGTPEEVRHADTLTGSYLGGRKHVANASNWRARPVEADTPRLTLSGVREHNLKHVNVE
IPLGRLVCVTGVSGSGKSTLVQDVLNPALARHFGDPTEAPGAHDELLGAEQLSGVVFVDQ
SPIGKTARSNPASYVGAFDEIRKLFAAEPVALQRGYTASTFSFNSGNGRCPTCGGSGFEH
VEMQFLSDVYLRCPDCDGKRYRAEVLDVKIQRAVPGEAMRELSVSDVLELTVNEAVKLFS
SDRDVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAEAAQKKTASGQKVAHR
GRLFIFDEPTTGLHFDDIAKLMRAFGKLLDGGNSLLVIEHNLDVVRAADWIIDLGPEGGE
GGGEVLCAGTLAQVVACEGSHTGRALAEYERTVVAPGQAVAVAKSAGDPGMPLQTALRAA
RAHRKPAGGDDIRIVNAREHNLKSLDVAIPRGKFSVITGVSGSGKSTLAFDILFNEGQRR
YLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTTEVWHFLRLLY
VKLGIQHCIHDGAPVTAQSPDSIVAQLMRDRRGQHVGLLAPLVVGRKGIYTDLAKWAKAR
GHSHLRVDGVFLPVDPWPKLDRFREHTIELPVGDVVITPENEGLLRTLLAAALELGKGVM
HLLAPLDGLGDTMANEQPGEGVGEIEVFSVKRACPVCGTSYPDLDPRMFSFNSKHGWCST
CVGTGLALTREQREAFDDTVLNQDNRGREHSLPSEEQEPEGVGDQPCPDCHGARLNTVAR
AVTFDEHAISDVAQWTVSDVREWIQRLELRGRDASIARDLISEIQGRLEFLEEVGLGYLT
LDRAAPTLSGGESQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNGILLGALRKLGDQGN
TLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQGSVADLAAHPESLTGKFLAHPLLHP
IQPRREVIAPAKGVEAVPPNWLTVHGATLHNLKHVTASLPLSRLTAITGVSGSGKSTLAR
DVLMTNLLDAVGRSVLSSPAERRARKGTVRHAVKADGKPRATSEAAAEPRRPVVHAWHGC
ESVTGWETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRRLFADTLEARARGYAASRFSF
NTGEGRCPACEGQGVRTIGMSFLADVKVLCDVCHGQRFNAETLAVTWRGKSIGDVLTMEV
DEAVEFFASMPSIAHPLQLMQDVGLGYLTLGQPSPTLSGGEAQRIKLVTELTKVRDDVTR
RGQKSPHTLYVLDEPTVGLHMADVARLINVLHRLVNGGHTVVVIEHNLDVIAEADWIVDM
GPEGGKNGGAVVAATSPDALTEVAASHTGIALKPVLAHSAALTASTATSEEAATAK
NT seq 5931 nt   +upstreamnt  +downstreamnt
gtggacaagtcatccccgaaatccgacccgtcggccagccacgccattcgcattcgcggc
gctcgccagcacaatctcaagaacctcgacgtcgatctgcagaccggcgagatgacggtc
gtgaccggcccatccggttccggcaagtcgagcctcgtcttcgacacgctgtttgccgag
ggccagcggcgctacgtcgaaaccttcagtgcgtacgcccgccagttcctcgaccgcatg
gatcgtccgcaggtcgatcatgtggaaggggtgccgccggccatcgccatcgatcagacg
aacccggtgcgcagctcgcgctcgacggtcggcacgatgaccgaactcaacgatcacctc
aaactgctgttcgcccgcgcggcggcgctgttcgatcgcgagacggcgcaaccggtgcgt
cacgacacgcccgagaccatctacgccgacctgatggcccgcactgccaacggcgatccg
cgtctggtcgtcaccttcccggtcgaactgccgggcagcgtgacggcggatgaggtcgag
caatggctctcggcatccggctatacgcgcgtgcaggccgagcgtgaagtcacaacggcg
gaaggctcgcgcaaggtgctcgatgtcgtcgccgaccggttccgcttgcagaacaccgag
aaagtgcgcgcgatggaagccatcgagtcgtcgctcaagcgcggccgcggccgcgtgaac
gtctacgtgctggccgacgaaggcgagcccgacatctggcgctactcgcaggatctgcac
tgtcccgacagcgatctgcattacgccgacccgcaaccggcgctcttctcgttcaactcc
gcctatggcgcatgcgaagcctgtcgcggtttcggccgggtgatcggtgtcgatctcggt
ctggtgattcccgacgagcgcaagacgttgcgcggtggtgcggtcaagaccattcagacg
cctgcgtggaaagagattcaggacgacctgctcgagtacgccggcaaagccggtattccg
cgcgacaccccctggtcgaaactctcgcccgagcatcgcgagtgggtcatcgaaggcgat
gccgactggaaaggcgagtggaacaagcagtggtacggcattcgccgcttcttcggctat
ctggagtcgaaggcgtacaagatgcacattcgcgtgctgctctcgaagtaccgcagctac
accacgtgcgagacgtgtggcggcgctcgcctgaagactgagggcttgctgtggcgtctg
ggctcgaaagagaacgccgacgccgtgctgccacctgcccagcgcttcatgccgcgcggc
gtgtcgtggtcgcgcgagcaactcgaagcattgccgggcctcaccatgcacgacctgatg
ctcatgccgatttcgcgtgtgcgtcagttcttcgattcgctcaccctgccctcaagcctg
ctcgacgacgccctcaaactgttgcaggaagaagtcggcacgcgtctgaagtatctgtgc
gatgtcggcatcggctatctcacgctcgatcgccagagccgcacgctctcgggtggcgaa
gtgcaacgtatcaatctgacgacggcgcttggcacgtcgctcgtcaacacgctcttcgtg
ctcgacgagccgagtatcggcctgcatccgcgcgacatggaccggatcgttgccgcaatg
caccgtctgcgcgacgccggcaatacgctcgtcgtggtcgagcatgacccggcggtcatg
cttgccgccgatcgggttatcgacatggggcccggaccgggcgagcgcggcgggcagatt
gtttttgacggcacgcccgaggaagtgcgtcatgccgacacgctgaccggcagttacctg
ggcgggcgcaagcatgtggcgaacgcctcgaactggcgcgcacgcccggtcgaggccgac
acgccgcgtctgacgctgagcggtgttcgcgagcacaacctcaagcatgtcaacgtcgag
attccgctcggccggctcgtgtgtgtgaccggtgtgtccggctccggcaaatcgacgctg
gtgcaggacgtgctgaatccggcattggcgcgtcactttggcgacccgaccgaggcgccg
ggcgcacacgatgaacttctcggcgccgaacaactgtcgggcgtggtgttcgtcgatcag
tcgcccatcggcaagacggcgcgctcgaatccggcgagctatgtcggcgcgttcgacgag
attcgcaagctgttcgctgccgagccggtggcgctgcaacgcggctacaccgcgagcacc
ttcagcttcaattccggcaatggacgttgcccgacctgcggcggttcgggcttcgagcac
gttgaaatgcagttcctgagcgatgtctatctgcgttgcccggattgcgacggcaagcgc
tatcgcgccgaagtgctcgatgtgaagattcagcgcgccgtgccgggtgaggcgatgcgc
gaattgagcgtctccgatgtgctcgagctgacggtcaacgaggctgtcaaactgttctcg
tcggatcgcgacgtgctgcgtgtccttcagccaatcgtggatgtgggtctggagtatgtg
aagctggggcagccggtgccgacgctctcgggcggcgaggcccagcgcctgaagctggcg
ggtttcctcgcggaagccgcgcagaagaagaccgcgagcggacagaaggtcgcgcatcgc
ggccgtctcttcattttcgacgagccgacgaccgggctgcacttcgacgacattgccaag
ctcatgcgcgcgttcggcaagttgctcgacggcggtaattcgctgctcgttatcgaacac
aacctcgatgtggtgcgcgctgcggactggatcatcgacctcggcccggaaggcggcgaa
gggggcggcgaagtgctgtgtgcgggcacgctcgcgcaggtggtcgcgtgtgaagggtcg
cataccggtcgcgccctggccgaatacgaacgcacggtggtcgcgccggggcaggccgtg
gcggtggccaaatccgcaggcgatccgggcatgccgttgcaaaccgcgctacgcgctgca
cgcgcgcaccgcaagccggcagggggcgacgacattcgtatcgtcaatgcccgcgagcac
aacctgaagtcgctcgacgtggcgattccgcgcggtaagttcagcgtgattaccggcgtt
tcggggtcgggcaaatcgacgctcgcgttcgacattctcttcaacgaagggcagcgtcgc
tacctcgaatcgctcaatgcctatgcgcgatccatcgtgcagcccgcagggcgcccggaa
gtcgatgccgtgtacggtattccgccgaccgtcgccatcgaacagcgcctgtcgcgcggc
gggcgcaagagtaccgttgcaaccaccacagaggtctggcacttcctgcgtctgctgtac
gtcaagcttggcattcagcactgtatccatgacggcgcgcctgtcacggcgcagagtccg
gattcgatcgtcgcgcaattgatgcgcgaccgtcgcggccagcatgtggggttgctcgcc
ccgctggtggtgggccgcaaggggatctataccgatctggcgaagtgggccaaggcacgc
ggacattcgcatttgcgagtggatggcgtgttcctgccggtcgacccttggccgaagctc
gaccgattccgcgaacacaccatcgaactgccggtgggcgatgtggtgatcacacccgag
aacgaagggctgctgcgcacgttgctggcggcggcgcttgaattgggcaagggcgtcatg
catttgcttgcgccgctcgacgggcttggcgacacgatggccaacgaacagccgggcgaa
ggcgtgggcgagatcgaggtgttctcggtcaagcgtgcgtgcccggtgtgcggcacgagt
tatcccgatctcgatcctcgcatgttctcgttcaacagcaagcatggctggtgttcgacg
tgcgtgggtacaggtcttgcgctcacgcgtgaacagcgcgaagccttcgacgacaccgta
ctcaatcaggacaatcgggggcgcgagcattcgctgccgtcggaagagcaggagccggaa
ggcgtgggcgatcagccgtgtccggactgtcacggcgcgcgcctcaatacggtcgctcgc
gctgtgacgttcgacgaacacgcgatctccgacgtcgcccagtggaccgtgagcgacgtg
cgcgaatggattcagcgactcgaacttcgcggccgcgacgcaagcattgcgcgcgatctg
atcagcgagattcaggggaggctggaatttctggaggaagtcgggctcggctacctcacg
ctggaccgcgcagcgccgacgctctctggcggcgagtcgcagcgcattcgtctggcggcg
caactgggcagcaacctgcaaggcgtttgctatgtgctggacgagccgaccatcggtttg
cacccgcgcgataacggcattctgctcggcgcgttgcgaaagctgggcgatcagggcaac
acgctggtcgtggtcgaacacgacgaggacacgattcgccgtgcggaccacatcatcgat
atcggcccgggcgcgggcaagcgcggcggtacgctcgtggctcagggcagcgtggccgat
ctggcggcgcatcccgagtcgcttaccggcaagttcctggcgcatccgttgctgcatccg
attcaaccgcgccgcgaggtgatcgcacccgccaagggtgtcgaggcagtaccgccgaac
tggctgacggtgcatggggcgacgctgcataacctgaagcatgtgacggcgtcgttgccg
ttatcgcggctcactgcgattaccggtgtttcggggtcgggcaaatcgacgctcgcacgc
gatgtgctgatgacgaatctgctcgatgcggtggggcgctcggtgttgtcgtcaccggcc
gagcgccgtgcccgcaaaggcacggtgcgtcacgccgtgaaggcagacggcaagccgcgt
gcgacctcggaggccgccgcagagccgcgccgtccggtggtgcacgcgtggcacggctgc
gagtcggtgaccggctgggagacgatcgatcgtgtgctcgaagtcgatcagacgcccatc
ggcaaaacaccgcgctcgtgtccagccacgtacatcggcttctgggacacgattcggcgt
ttgtttgccgatacgctggaagcccgagcgcggggttacgcagcgtcgcgattctcgttc
aatacgggcgaggggcgttgtcccgcgtgcgaagggcaaggcgtgcgcaccatcggcatg
agtttccttgccgacgtgaaggtgctttgcgatgtctgtcacggtcagcgcttcaacgcc
gagacgttggctgtcacctggcgcggcaagagcatcggcgacgtgctgacgatggaagtg
gacgaagccgtcgagttctttgcgtctatgccaagcatcgcgcatccgttgcaactgatg
caggacgttgggctcggctatctcacgctgggtcagccatcgccgacgctgtcgggcggc
gaagcgcagcgtatcaagctggtgacggagttgaccaaggtgcgtgacgacgtcacgcgt
cgcgggcagaaatcgccgcacaccctttacgtgcttgacgaaccgaccgttggtcttcac
atggctgacgtggcgcgacttatcaatgtcttgcaccggttggtgaatggcgggcatacc
gtcgtggtcatcgagcacaacctcgacgtgattgccgaagccgactggatcgtcgacatg
gggccggaaggcggcaagaacggtggggccgtggtggcggcaacctcacccgatgcgctg
accgaggtcgccgcaagtcataccggtattgcgctcaaaccggtgctcgcgcactccgcg
gccttgacggcatcgacagcgacgtcggaggaagctgccacggcgaagtag

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