Pantoea ananatis PA13: PAGR_g2039
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Entry
PAGR_g2039 CDS
T01970
Name
(GenBank) DNA topoisomerase I TopA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
paq
Pantoea ananatis PA13
Brite
KEGG Orthology (KO) [BR:
paq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paq03032
]
PAGR_g2039
03400 DNA repair and recombination proteins [BR:
paq03400
]
PAGR_g2039
Enzymes [BR:
paq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PAGR_g2039
DNA replication proteins [BR:
paq03032
]
Prokaryotic type
DNA Topoisomerases
PAGR_g2039
DNA repair and recombination proteins [BR:
paq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PAGR_g2039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AER32554
LinkDB
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Position
2210336..2212933
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSGYVVKSSVGHIRDLPTSGSTAKKSAETSTDKKVKKVK
KDEKAALVSRMGVDPYHGWEADYQILPNKEKVVAELKALAENADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIRQAFDTPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKVARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELSANLTTPKGDDLAMDVTH
AGDKPFRPVNHEQTHAALALLEKARFAVTDREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVSMVRGYIEGNFGKKYLPDNANTFASKEN
SQEAHEAIRPSDVDVVAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVTAGDY
KLKAKGRTLRFDGWTKVMPALRKNDEDRTLPPVNVGDELSLQALLPSQHFTKPPARFSEA
SLVRELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAHMESSLDQVANNQAEWKAVLDRFFSDFSQQLEQAEKDPEEGGMQPNQMVLTTIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNILEGDDAETNALRARR
RCQKCGTAMDSYLIDNGRKLHVCGNNPECDGYEIEEGEFRIKGYDGPVVECEKCGSEMHL
KMGRFGKYMACTNDDCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELQRFHDRLPEKLKYLAEAPATDPEGNKTLVRFSRKTKQQYV
ASEKEGKATGWSAFYIDGKWQEAKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcactcgttattgttgagtccccggcaaaggccaaaacaatcaataaatac
ctgggcagtggctacgtggtgaaatccagcgtgggccatatccgggatctgccgaccagt
ggttcaaccgccaaaaaaagtgctgaaacctcgacagataaaaaagtcaaaaaagtaaag
aaggacgagaaggccgcgctggtcagccgtatgggcgttgatccctatcatggctgggaa
gcggactaccaaatcctgccaaataaagagaaggtggtcgctgaactcaaagccttggct
gaaaacgctgaccacatttatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtcatcggcggcgacgacaaacgctttagccgcgtggtgtttaac
gaaatcaccaaaaatgcgatccgtcaggcgtttgatacgccgggcgaactgaatattgac
cgcgttaatgcgcaacaggcacgccgctttatggaccgtgttgtgggctacatggtttcg
ccgctgttgtggaaaaaagtcgcgcggggattatccgcgggccgcgtacagtcggttgcc
gtgcggttagtggttgagcgtgagcgcgagatcaaagcgtttgttcctgaagagtattgg
gaactcagcgctaacctgacgacgccgaagggcgatgacctggcgatggacgtgactcac
gcgggtgataagcctttccgtccggtcaatcacgaacagacgcatgccgccctggcgctg
cttgaaaaagcccgctttgccgttaccgatcgcgaagataagccaaccagcagtaaaccc
ggtgcgccatttattacgtctacgctgcagcaggccgcgagtacccgcctgggctttggc
gtcaaaaaaaccatgatgatggcacagcgactttatgaagcgggtcatatcacctatatg
cgtaccgactcgaccaatctgagtcaggacgcggtttccatggtgcgcggctatatcgaa
gggaatttcggtaaaaagtatctgccagacaacgccaatacctttgccagcaaagagaat
tcacaggaagcgcacgaagcgattcgtccttctgacgtggatgtggtggctgagcagctc
aaagatatggaagcggatgcacaaaagctgtatcagctcatctggcgtcagtttgttgcc
tgccagatgacacctgctcagtatgattcaaccacgctgacggtaacagcgggggattac
aaactgaaggccaaagggcgcacgctgcgttttgacggctggactaaggtcatgcccgcc
ctgcgcaagaacgatgaagatcgcaccttgccgccggtgaacgtgggtgacgaactgagc
ctgcaggcattgctgccaagccagcactttaccaagccaccggctcgcttcagcgaagcc
tcgctggtgcgcgaactggaaaaacgtggaattggccggccttcgacctatgccgctatt
atttccaccattcaggaccggggctatgtccgggttgagaatcgccgattttatgccgag
aaaatgggtgaaatcgtcaccgatcgcctggaagaaaatttccgcgaactgatgaattac
gatttcaccgcgcatatggaaagcagcctcgaccaggttgccaacaatcaggcggagtgg
aaagcggtgcttgatcgcttcttctcagacttcagccagcagctggaacaagcggagaaa
gatcctgaagaaggcggcatgcagccaaaccagatggtgttaaccaccattgactgcccc
acctgcggccgcaaaatgggcattcgcacggccagtaccggcgttttcctgggatgttca
ggttacgcactgccgccgaaagagcgctgcaagcaaaccattaacctgattccagaaaat
gaagtgctgaatattctggaaggggacgatgcggaaaccaatgcgttacgcgcacgtcgt
cgttgccagaagtgcggcacggcaatggacagctacctgattgataacggacgcaaactg
cacgtgtgtggtaacaaccctgaatgcgatggctatgaaatcgaagagggcgagttccga
atcaaaggttacgacggtccggtggttgagtgcgaaaagtgcgggtctgaaatgcacctg
aagatggggcgtttcggtaagtacatggcctgtaccaacgatgactgcaagaatacacgt
aaaattttgcgtaatggcgatgtggcaccaccgaaagaagatccggtgccgctgccagaa
ctgccgtgtgaaaagtcagatgcctactttgtgctgcgcgacggtgcggcgggtgtgttc
ctggccgctaacacctttccaaagtcacgtgaaacccgtgcaccgctggtggaggaactg
caacgtttccacgatcgcctgcctgagaagttgaaatacctggccgaagcgccagcaacc
gatccggaaggcaataaaacgttggtgcgctttagccgtaaaacgaaacaacagtacgtt
gcctctgaaaaagagggtaaagcgacgggctggtcagcgttttacattgacggcaagtgg
caggaagcgaaaaagtaa
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