KEGG   Paraburkholderia sp. SOS3: BTO02_12435Help
Entry
BTO02_12435       CDS       T04966                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
para  Paraburkholderia sp. SOS3
Pathway
para03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:para00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BTO02_12435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:para03400]
    BTO02_12435
Enzymes [BR:para01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BTO02_12435
DNA repair and recombination proteins [BR:para03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BTO02_12435
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: APR36085
UniProt: A0A1L6HXS1
LinkDB All DBs
Position
1:complement(2781330..2784230)
Genome map
AA seq 966 aa AA seqDB search
MADKLETYHRKRRFDETPEPSGADAPRKAAGRGAARKATHALAFVIQEHDARRLHYDFRL
ELDGTLKSWAIPKGPSLDPSVKRLAVHVEDHPLDYGSFEGTIPEGHYGAGDVIVWDRGTW
EPVGGEREALAAYAAGKLKFQLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDREAHSE
SEFDVLGAYPGSVLSDAPGAQGGHGASKGERAARPQTKPQSTGRAPARTARTSTGTSAAR
RSEHPDIVATRNSESLRELAQTPAIEGAKKAALPAAMKPELATLVETPPAGDTWTYEIKF
DGYRVLARIDQRNEKDPVRIFTRAGNDWTERFGKQAQALAKIGVETAWLDGEAVVLDEHG
VPSFQALQNAFDTHRERDITLYLFDLPYLNGYDLRNVPLEQRRALLRALLESLDDDALRY
SADFGTDAEALIRSACEMSLEGIIGKRRDSRYTSGRSSAWIKLKCRRRQEFVIGGYTEPG
GSRSDFGALLLGVYDEGGKLRYAGRVGTGFDAKRLRAVKKELDARETTKMPFASVPSERS
RTPVHWVKPELVAECNFAELTDEGIVRQASFVSLRSDKPARQIVIEAPRQGADVQQTSED
ESAASRAAPRTKARAAKARTATHDGDGTAATKRAGKASSSRKTAQAEGGDTRAATAASRG
TSKARGAATQTVAGVRISHPDRVIDKHTDTRKIDLVRYYESVADWMLPHLRDRPVSLVRA
PEDIGGELFFQKHAEKLSIPNITQHPGLDPGHPSLITIDSAKALVGAAQMGTIELHTWNA
VASNIEKPDRVVFDLDPDPALGWERMIEAAQLTHTLLAELGLVSFCKTSGGKGLHVVVPL
TKHEGWDDVKAFSQAVAQHMASTLPKNFAAKMGAQNRKGKIFVDYLRNNRGSSTVAAYSA
RARPGLGVSVPLSWDEVPDTTAGDQWNIANLHERLQSLREDPWADYAKTRQRITAAMRKR
LAGERG
NT seq 2901 nt NT seq  +upstreamnt  +downstreamnt
atggccgacaaactggaaacctatcaccgcaaacgacgcttcgatgaaacgcccgagccg
tccggggcggatgcgccgcgcaaggccgccggccgaggcgcagcgcgcaaagcgacgcat
gcgctcgccttcgtcattcaggagcacgatgcacggcgtctgcactacgacttccggctc
gagctcgacggcaccctgaaatcgtgggcgataccgaaagggccgagcctcgacccgtcg
gtgaagcggctcgccgtgcacgtcgaagaccatccgctcgactatgggtcgttcgagggc
acgattccggaaggccactatggcgcaggcgacgttatcgtttgggaccgtggcacgtgg
gaaccggtcggcggcgagcgcgaggcgctcgccgcatacgcggccggcaagctcaagttc
cagttgcacggcgagaagctgcacggcggctggacgctcgtgcgcagccatatgcgcggc
agcggcgacaaggagcagtggctgctgatcaaggagcgcgaccgcgaagcccatagcgag
agcgaattcgatgtgctcggcgcgtatcctggcagtgtgttgtccgatgcgccgggcgcg
cagggcgggcacggtgcgagcaagggcgagcgcgccgccaggccgcagaccaagccgcaa
tcgactggccgcgcgcccgctcgcacggctcgtaccagcactggcaccagcgcggccagg
cgcagcgagcaccccgacatcgtcgcgacgcgcaacagcgagtcgctgcgcgagctcgcg
caaacgcctgcgatcgaaggagcgaaaaaggccgcgctgcctgccgcgatgaagccggag
ctcgctacgctcgtcgaaaccccgcccgccggcgacacatggacctacgagatcaagttc
gacggctaccgcgtgctcgcgcgcatcgatcagcgcaacgagaaagatccggtgcgcatt
ttcacgcgcgcgggcaacgactggaccgaaaggttcggcaaacaggcgcaagcgctcgcg
aagatcggagtcgagaccgcatggctggacggcgaagccgtggtgctcgacgagcatggc
gtaccgagctttcaggcgctgcaaaacgcgttcgatacgcatcgcgaacgcgacatcacg
ctgtatctgttcgacctgccgtatctgaacggctacgacctgcgcaacgtaccgctcgaa
cagcgccgcgcattgctacgcgcgctgctcgaatcgctcgacgacgacgcgttgcgctat
tcggccgacttcggcactgacgctgaggccttgatcagaagcgcgtgcgagatgtcgctc
gaaggcatcatcggcaagcggcgcgacagccgttatacgtcgggccgttcgtcggcatgg
atcaagctcaaatgccggcggcgccaggaattcgtgatcggcggttatacggaaccgggc
ggcagccggtcggacttcggcgcgctgctgcttggcgtctacgacgaagggggcaagctg
cgctatgcaggccgcgtcggcacgggcttcgatgcgaagcggctgcgtgccgtaaaaaaa
gagctcgacgcgcgcgaaacgacgaagatgcctttcgcgagcgtacccagcgaacgcagt
cgcacacccgtgcactgggtcaagcccgagctcgtcgccgaatgcaatttcgccgaattg
accgatgaaggcatcgtccgccaggcgtcgtttgtcagcctgcgcagcgataaacccgcg
cggcagatcgtcatcgaagcgccgcgccaaggagctgacgtgcaacagacgagtgaagac
gaaagcgcagcctcgcgggccgcgccgcgtacgaaggcacgcgcggcgaaagcgcggacc
gcgacgcatgacggcgacggcacggcggcaaccaaacgcgcaggtaaggcgtcttcgtcg
cgcaagacggcgcaagccgaaggcggcgacacgcgcgcggcaacggctgcgtcgcgcggc
acatcgaaagcgcggggcgccgcgacgcagacggtcgcgggcgtgcggatctcgcatccg
gaccgcgtgatcgacaagcacacggacacacgcaagatcgatctcgtgcgctattacgag
tcagtggccgactggatgctgccgcatctgcgcgatcgcccggtgtcgctcgtacgcgcg
cccgaggatatcggcggcgagctgtttttccagaagcatgccgaaaagctgtcgatcccg
aacatcacgcagcatccggggctcgatcccggccatccgtcgctgatcacgatcgacagc
gcgaaagcgctcgtcggcgcggcgcagatgggcacgatcgagttgcacacgtggaatgcg
gtggcctcgaacatcgagaaacccgaccgcgtcgtgttcgatctcgaccccgatcctgcg
ctcggctgggagcggatgatcgaagcggcgcaactgacgcatacgctgctcgccgaactc
ggactcgtatcgttctgcaagacgagcggcggcaagggcctgcatgtcgtggtgccgctg
acgaaacacgagggctgggacgacgtaaaggcgttttctcaggccgtcgcgcagcacatg
gcgagcacgctgccgaagaacttcgccgcgaagatgggcgcgcaaaaccgcaagggcaag
atattcgtcgactacctgcgcaacaaccgcggctcgagcacggtcgcagcctattcggcg
cgcgcgcggccgggtctcggcgtctcggtgccgctcagttgggacgaagtgccggacacc
acggccggcgaccagtggaacatcgcgaatctgcacgagcgcctgcagtcgctgcgcgag
gatccgtgggccgactatgcgaagacgcggcagcgcatcacggcggcgatgagaaaacgc
ctcgcgggcgaacgcgggtag

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