KEGG   Pseudoalteromonas arctica: PARC_a2902Help
Entry
PARC_a2902        CDS       T05179                                 

Gene name
lig
Definition
(GenBank) DNA ligase (ATP)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
part  Pseudoalteromonas arctica
Pathway
part03030  DNA replication
part03410  Base excision repair
part03420  Nucleotide excision repair
part03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:part00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PARC_a2902 (lig)
   03410 Base excision repair
    PARC_a2902 (lig)
   03420 Nucleotide excision repair
    PARC_a2902 (lig)
   03430 Mismatch repair
    PARC_a2902 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:part03032]
    PARC_a2902 (lig)
   03400 DNA repair and recombination proteins [BR:part03400]
    PARC_a2902 (lig)
Enzymes [BR:part01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PARC_a2902 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     PARC_a2902 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PARC_a2902 (lig)
DNA replication proteins [BR:part03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PARC_a2902 (lig)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PARC_a2902 (lig)
DNA repair and recombination proteins [BR:part03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PARC_a2902 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     PARC_a2902 (lig)
   MMR (mismatch exicision repair)
    Other MMR factors
     PARC_a2902 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M Qn_am_d_aII
Motif
Other DBs
NCBI-ProteinID: ATC87341
UniProt: A0A290S8K5
LinkDB All DBs
Position
I:complement(2840927..2841769)
Genome map
AA seq 280 aa AA seqDB search
MFTIKYLLLIVVVLFTQCISAAQPSVLLAKVYNETKHYDVSKYLVSEKYDGVRAIWTGTQ
FVTRKGNIINAPSWFTAPLPNVWLDGELWTKREHFSKLSGIVRTKKPNNHDWQTITYKVF
DMPDENLPFSTRYKNYNELITSLNSPHISVVVQYSFTNNEQLTEYFENITKQGGEGVMLH
LASAKHSNGRSNALLKLKPYLDAEAVVIAHLPGKGKYQGMLGALRVKTAQGQVFSIGTGF
SDAERSTAPEIGSTVTYRFHGLTKNGLPRFASFLRVRDSL
NT seq 843 nt NT seq  +upstreamnt  +downstreamnt
atgtttactattaaatacctgcttttaattgttgttgtactttttacgcaatgtataagt
gcagcacaaccttctgttttactggctaaagtatataacgaaactaaacattacgatgta
agtaagtatttagtcagtgaaaaatatgatggcgtaagagctatatggactggcacgcag
tttgttactcgcaagggcaatattattaatgcgccgagttggtttacagcgccattgcca
aatgtatggcttgatggtgagctatggaccaagcgtgagcacttttctaagcttagtggc
atagtaagaactaaaaaacctaataatcatgattggcaaactattacttataaagtattt
gatatgccagatgaaaatctgccttttagcactcgttataaaaactataatgagcttatt
actagcctaaactcgccgcacattagcgttgtagttcaatatagctttactaataatgag
cagctcacagaatattttgaaaacataactaagcagggcggcgagggcgtaatgctacat
ttggctagtgctaagcacagcaatggccgaagcaatgcattactaaaattaaaaccttat
ttagatgcagaagcggttgtgattgcgcatttaccaggtaaaggaaaataccaaggtatg
ttaggggcattaagggtaaaaacagcacaagggcaggtgttttctattggtacagggttt
agtgatgcagaacgttccactgcacctgagataggtagcactgtaacgtaccgatttcat
ggattaacaaaaaacggtttaccgcgttttgctagttttttacgagtaagagatagttta
taa

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