KEGG   Paracoccus sp. CBA4604: CYR75_01430Help
Entry
CYR75_01430       CDS       T05276                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
paru  Paracoccus sp. CBA4604
Pathway
paru03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:paru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CYR75_01430 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:paru03400]
    CYR75_01430 (ligD)
Enzymes [BR:paru01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CYR75_01430 (ligD)
DNA repair and recombination proteins [BR:paru03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CYR75_01430 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AUM73128
UniProt: A0A2K9MBW7
LinkDB All DBs
Position
complement(278915..281401)
Genome map
AA seq 828 aa AA seqDB search
MAKLDPYRRKRDFTITSEPEGKVAQTPGRSFVIQKHAARRLHYDFRLEMDGVLKSWAVTK
GPSLVPGAKRLAVHVEDHPLDYGGFEGNIPKGQYGGGAVILWDRGQWQPLGDADKGYAKG
HLEFELQGEKLTGRWHLVRMQKKPNEKRENWLLIKADDEAARGEDAPDILEERPESVASG
RSVEEVAAEAEKGAAPKRKPKAKAAKAKPAPDMDGAKKAKMPDFVQPALATLRAKAPEGE
GWIHEIKFDGYRLQAHIAEGQVKLLTRSGLDWTDRFGDGLIAALKALPVTTALIDGEVVV
EGGNSASSFSALQADLSEGRTDRFVFYAFDLMYLDGFDLRQAALQTRKSRLAAILPDQGP
VRFSSDFTESGDLVLRHACRLSLEGIVSKRLDAPYRSGRGKSWIKSKCSDRQEFVVGGYV
PSSATDKAIGSLVLGVYRDGALHHVGRVGTGFKAQVARDLFRQLQALETPDSPFADKLDA
TQRRGVQFVQPKLVAEVEFRAWTADGHLRHASFRGLREDKPATEVVQESQRKTPEAPRRR
VTLTHPDRIYWPEAGVTKEGLADYYTDVWPYMAPLVVGRPLALVRAPSGITGQRFFQKHA
RSGLNKHVRQVTDPKDKGGEKLISIDDLDGLIGLVQSGALEIHPWGAMNANLDKPDSLTM
DLDPGEGVGWQAVIDAAQEVRARLQAAGLNCFVKTSGGKGLHVVAPLKPKASWTALKAFT
KAIAAQMAADEPERFVATITKSKRKGRILIDYLRNQRGATTVAAYSSRAREGAPVSMPLA
WEELSPQIGPDHFTVLNATARLNGLVADPWQDFLAAAVPLPAGKGKAD
NT seq 2487 nt NT seq  +upstreamnt  +downstreamnt
atggcaaagctggacccctatcgccgcaagcgcgacttcaccatcacctcggaacccgag
gggaaggtcgcgcagacgcctgggcggtccttcgtgatccagaaacacgccgcccggcgg
ctgcactacgatttccggctggaaatggacggggtgctgaaaagctgggccgtgaccaag
ggtccaagcctcgtgcccggcgcaaagcggctcgcggtccatgtcgaggatcatccgctg
gattatggcggttttgagggcaacatcccaaaggggcaatatggcggcggcgcggtcatc
ctgtgggaccggggtcagtggcagccgctgggcgacgcggacaagggctatgccaagggg
catctggaattcgaattgcagggcgagaagctgaccgggcgttggcacctggtgcggatg
cagaagaagcccaatgagaagcgcgagaactggctgctgatcaaagccgatgacgaggcc
gcccgcggcgaggatgcgccggacattctggaagagcggcccgagtcggtggcaagcggc
cgcagcgtcgaagaggtcgcggccgaggccgagaaaggcgcggcgccgaagcgcaagcca
aaggccaaagccgccaaggccaagcccgcgcccgacatggacggcgcgaagaaggcgaag
atgccggatttcgtccagcccgcgctcgccacccttcgcgccaaggcgcccgagggcgag
ggctggatacacgagatcaagttcgacggctatcgcctgcaggcccatatcgccgagggt
caggtcaagctgctgacccgcagcgggctcgactggaccgaccgcttcggcgacgggttg
atcgcggcgctgaaggccctgcccgtcaccaccgcgctgatcgatggcgaggtggtggtc
gaggggggcaacagcgcctcgagcttttccgcgctgcaggcggatctgagcgaggggcgg
accgaccgctttgtcttctatgctttcgacctgatgtatctggacggcttcgacctgcgg
caagccgcgctgcagacgcgcaaatcgcggctggcggcgatcctgcccgatcaggggccg
gtgcggttcagcagcgatttcaccgaaagcggcgacctggtgctgcgccatgcctgccgg
ctgagcctcgaagggatcgtgtccaagcggctggacgcgccctatcgctcgggtcgcggg
aaaagctggatcaagtcgaaatgctcggaccggcaggagttcgtggtggggggctatgtg
ccctcgtcggccacggacaaggccatcggctcgctggtgctgggggtttaccgcgacggg
gcgctgcaccatgtcggccgggtcgggaccgggttcaaggcgcaggtcgcgcgcgatctg
ttccggcagttgcaggcgctggaaacgcccgacagcccctttgccgacaagttggacgcg
acgcagcggcgcggcgtccagttcgtccagccgaagctggtggccgaggtcgagttccgc
gcctggaccgccgacgggcatctgcgccacgcctcgtttcgggggctgcgcgaggacaag
ccggcgaccgaggtggtgcaggaatcgcagcgcaagacccctgaggcgccgcgccgacgg
gtgacgctgacccatcccgaccgcatctattggcccgaggccggggtcacgaaagagggg
ttggcggattattataccgacgtttggccctatatggcgccgttggtggtgggccgcccg
ctggccttggtgcgcgcgcccagtggcatcaccgggcagcggtttttccagaagcacgcg
cgcagcgggctgaacaagcatgtgcggcaggtcacggatcccaaggacaagggcggcgaa
aagctgatctcgatcgacgatctggacgggctgatcggtctggtccagtcgggcgcgctg
gaaatccacccctggggcgcgatgaacgccaatctggacaagcccgacagcctgacgatg
gacctcgatcccggcgagggggtgggctggcaggcagtgatcgacgccgcgcaagaggtg
cgggcgcggctgcaggcggcggggctgaactgtttcgtcaagacctcgggcgggaaaggg
ctgcatgtggtggcaccgctgaagcccaaggcgtcgtggacggcgctgaaggcgttcacc
aaggccatcgccgcgcagatggcggccgacgagccggagcgctttgtcgcgacgatcacg
aaatccaagcgcaagggccgcatcctgatcgactatctgcgcaaccagcggggcgcgacc
accgtcgccgcctattccagccgcgcccgcgaaggcgcgccggtctcgatgccgctggcg
tgggaagagttgagcccccagatcgggccggatcacttcaccgtgctgaacgccaccgcc
cgcctgaacgggctggtggccgatccgtggcaggattttctggctgctgccgtgccgctg
cctgcgggcaaggggaaagctgactga

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