Peribacillus asahii: BAOM_0059
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Entry
BAOM_0059 CDS
T06700
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pasa
Peribacillus asahii
Pathway
pasa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAOM_0059 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pasa03400
]
BAOM_0059 (mfd)
Enzymes [BR:
pasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAOM_0059 (mfd)
DNA repair and recombination proteins [BR:
pasa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAOM_0059 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
IstB_IS21
HPD
PTH2
UB2H
NitrOD5
Motif
Other DBs
NCBI-ProteinID:
AZV40802
UniProt:
A0A3T0KK99
LinkDB
All DBs
Position
54693..58235
Genome browser
AA seq
1180 aa
AA seq
DB search
MVNGLQNLFSKHDNVHSLIAGIDEGLKEQLVSGLTGSSRSMLVASIYEKTNKSILLVTHN
LLQAQKFQEDLLNFIPEEELYVFPANELIAADLSVASPELRAQRVEALNFWSQGKKGVVI
VPIPGIRKFLSPKEVWKKYQLSFQVGADIELEETLHKLITMGYSRTEMVSSPGECSIRGG
IIDLYPITEMNPIRIELFDTEITSIRTFSSDDQRSIEKLSRVTVGPVSEALLEDEHLNNI
MTKLESNLSKSLKKFKDDKVKEQLAETVGHELEQLKQGQKPDQIFKYFSLAYDKPASLID
YLPGDGIVLLDEISRIQEINESLEKEEAQWYTDLLGEGKIVHDVKLAHDLPSLITHSSYP
FIYLSLFLRHVPHTNPQNIVNVACKQMQNFYGQMNVFKAEVEHWKKGQYTVVILGQDEER
MKKIQGVLADYDIEAAELKDSSHLQPGQVQILRGSLNSGFEMTMEKIVIITETELFNKRA
KKSSRRQKLSNAERIKSYSELKVGDYVVHVNHGIGKYLGIETLVINGVHKDYLHIRYQAD
DKLYVPVDQIDLVQKYVGSEGKEPKLYKLGGTEWKRVKSKVHSSVQNIADDLIKLYAERE
AAKGFAFSPDGDMQREFELSFLYNETEDQLRSIAEIKKDMERERPMDRLLCGDVGYGKTE
VAIRAAFKAIADGKQVAFLVPTTILAQQHYETLRERFQDFPISIGLMSRFRTRKQQTETV
KGLKTGTVDIVVGTHRILSKDIQYHDLGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGGLVKEAIERELARDGQVYFLY
NRVEDIARKAEEIAMLVPDARVTFAHGQMTEQELEAVMFGFLEGEYDVLVSTTIIETGVD
IPNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAFFTYRKDKVLTEVAEKRLQSIKEF
TELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAVEAKRNEQPAEEKV
SLDMDIEVDAYIPDAYIADGHQKIEMYKRFRGITSIEEVKELQEEMRDRFGEYSEEVHYL
FLMAEMKVYAMKAGIESIKQLKQVITILFSENDTQKVNLKQVSELTAKHSRMISLGMEGK
CLKLAVHTKGIEQSKWFKVLFELVEGLQQAKQEVQIAEKN
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatggattacaaaatttgttctccaagcacgataatgtccattcgttaatagcg
ggtattgatgaaggattaaaggaacaattggtttctggcttaacgggttcatcaaggtcg
atgcttgtggcatctatctatgagaaaacgaataagtccattttgttagtgacacataat
cttctacaagcacaaaaatttcaagaggatttgttgaattttattccggaagaagagctt
tatgtgtttcctgcaaatgagttaattgcagcagatttaagtgttgctagccccgaatta
agggcgcagcgagtagaggcattaaatttttggtcgcaagggaagaaaggcgttgttatt
gtcccgattcctggtattcgtaagttcctttcaccaaaagaggtatggaagaagtatcag
ctgtcctttcaagtgggggctgatattgagctggaggaaacattacataaattaattact
atgggatatagtcgtacggagatggtttcttcaccaggtgaatgtagtattcgcggtggg
attattgatttgtatccgattaccgaaatgaatccaattcgaattgaattatttgataca
gagattacgtcgattcgaacattttcttctgatgatcaacgttctattgaaaagctttct
cgagtgacagttggaccagtaagtgaagctttactagaagatgaacatcttaataatata
atgacaaagcttgaaagcaacttaagtaagagtttgaaaaagtttaaagatgataaagtg
aaggaacagcttgctgagacagtggggcatgaattagagcaattaaaacaaggacagaag
ccggatcaaatttttaagtatttcagtttagcgtacgataaaccggctagtttaatagat
taccttcctggcgatggaattgttcttttggatgaaatcagccggattcaagaaattaat
gaatcattagagaaagaagaagcccagtggtacaccgatttattaggtgaggggaaaatt
gttcatgatgtgaagctagctcatgacctgccgagtttaattacgcattcttcttatcca
ttcatttatttatcattgtttttacgccatgtaccgcatacaaacccacagaatattgtg
aacgtggcttgtaagcaaatgcagaacttttatggacaaatgaatgtatttaaagcagag
gttgagcattggaaaaaaggacagtacaccgttgtgattcttggtcaggatgaggaacgg
atgaagaagattcagggggtgctggcagattacgatatcgaagctgctgaattaaaggat
tctagtcatttacagccaggccaagttcaaatcttgcgtggtagtttaaatagtggtttt
gaaatgacgatggaaaaaatcgtgattattacagaaacggagctatttaataaaagggcg
aaaaaatcgagtcgcaggcagaaattatcgaatgcagaacgaattaaaagttattctgag
ttaaaagtaggcgactatgttgttcatgtgaatcatggaattgggaagtatttagggatt
gaaacattagttattaatggcgttcataaagactacctccatatccgttatcaagcagac
gataagttgtatgtacctgttgatcaaattgaccttgttcagaagtatgtcggttcggaa
gggaaagaaccgaagctttacaaactgggtggaacagagtggaaacgagtgaaaagtaag
gttcactcctctgtgcaaaatatcgcagacgacttgattaaattgtatgccgagcgggaa
gcggcaaaagggttcgcattctcaccggatggagatatgcaaagagagtttgaattatcc
tttttatacaatgaaacggaagatcagttgcggtcaatcgctgaaattaagaaagatatg
gagcgggaaagaccgatggaccgcttgctttgtggcgatgtagggtacgggaagacagaa
gtggctattcgtgctgcttttaaagcgattgcagatggaaaacaagtagcctttcttgtt
ccaacaacgattttagctcaacagcattatgaaacattacgagaacgttttcaggatttc
ccgatttccataggtttgatgagtcgttttcgaacgagaaagcaacaaacagaaacggta
aaaggcctgaagacaggtactgttgatatcgttgtcggtacacaccggattttatcgaag
gatattcaatatcatgatttaggccttttaattatcgatgaagagcaacgttttggagtg
acgcataaagaaaaaatcaagcaattgaagacgaatgtggatgtgctgacgttaacagca
acgccgattcctcgtacccttcatatgtcgatgctcggagttcgagacttatcggttatt
gaaacaccgccagaaaatcgtttccctattcaaacctatgtgatggagtataatggagga
ttggtgaaagaggctattgagcgagagctggctcgagatggtcaagtctatttcctctat
aaccgtgtggaagatattgcgcgcaaagcagaggaaattgctatgctcgttcctgatgct
cgtgtgacatttgcgcatggccaaatgacagagcaggaattggaagccgtgatgtttggt
ttcttagagggagaatacgacgtattagtaagtacgacgattattgaaaccggtgttgat
attccgaacgtaaatacgttaattgtgtatgatgcagatcgaatgggtctttcccagctg
tatcagcttcgcggtcgagttggacgttcaaatcgagtggcgtatgctttctttacgtat
cgaaaagataaagtgctaaccgaggtagctgaaaaacgcctgcaatcgattaaagagttt
actgaacttggttccggattcaagattgcgatgcgcgacttatccattcgtggagcgggg
aacttgcttggagcccaacagcatggatttattgattcggtcggctttgatttgtattcg
caaatgttaaaagaagctgtagaagcaaaacgtaatgagcaaccggcagaagaaaaagta
tcactggatatggatattgaagtagacgcctatataccagatgcctatattgctgatggt
catcaaaaaatcgagatgtataaacgatttagaggcattacttcaattgaagaagtgaaa
gagctgcaagaggaaatgagagaccgttttggtgaatattcagaagaagttcattattta
tttttaatggctgaaatgaaagtttatgcaatgaaagctggtattgaaagcattaaacaa
ttaaaacaggttattaccatcttattttcagaaaacgatacacaaaaagttaatttaaaa
caggtgagcgagcttaccgcgaaacatagtagaatgattagcttaggtatggaagggaaa
tgcttaaagctggctgttcatacgaagggtatcgagcaatctaaatggtttaaggtgtta
tttgaacttgtggaaggacttcagcaggccaaacaagaagtacaaatagcggaaaaaaat
taa
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