KEGG   Pseudoalteromonas atlantica: Patl_0073Help
Entry
Patl_0073         CDS       T00372                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pat  Pseudoalteromonas atlantica
Pathway
pat03030  DNA replication
pat03410  Base excision repair
pat03420  Nucleotide excision repair
pat03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pat00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Patl_0073
   03410 Base excision repair
    Patl_0073
   03420 Nucleotide excision repair
    Patl_0073
   03430 Mismatch repair
    Patl_0073
Enzymes [BR:pat01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Patl_0073
    6.5.1.6  DNA ligase (ATP or NAD+)
     Patl_0073
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Patl_0073
DNA replication proteins [BR:pat03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Patl_0073
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Patl_0073
DNA repair and recombination proteins [BR:pat03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Patl_0073
   NER (nucleotide excision repair)
    Other NER factors
     Patl_0073
   MMR (mismatch exicision repair)
    Other MMR factors
     Patl_0073
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ABG38605
UniProt: Q15ZT3
LinkDB All DBs
Position
complement(85909..86748)
Genome map
AA seq 279 aa AA seqDB search
MSVFTPPILIFLISIHSSTVLALTKPEIELANRFNDAVNVSDYLVSEKLDGIRARWDGSR
LLTRTGNPIFAPQWFTNGLPKHIFDGELWIARQRFEKTASVVLTHEPGDDWREVKFMLFD
LPEFTGAFSERLRMLEVLVQQANLPHLQVIPQQKLHSKSALMQLLDQVIDGGGEGLMLHH
EDALYTPSRSDNVLKLKKHQDAEAIVLAHLPGNGKYQGMMGSIRVQMSNGKVFKIGSGFS
DQERLSPPPIGAVITFKYYDLTINGIPKFASYIRQKPSY
NT seq 840 nt NT seq  +upstreamnt  +downstreamnt
atgtcagtgttcacgccccctattttaattttcttaataagcattcacagctctacggta
cttgccttaaccaagccagaaatcgagttagccaatcgtttcaatgatgctgttaacgtc
tctgactatcttgtgagtgaaaagctagacggcattcgggctcgttgggatggtagtaga
ctactcacacgcacgggtaaccccatatttgccccgcaatggtttaccaacggcttaccc
aaacatatttttgatggtgaattatggattgccaggcaacgctttgaaaaaacggcttca
gtggtgttaacccacgagccaggggatgactggcgagaggtaaaatttatgttgtttgat
ttacccgagtttacaggcgcctttagtgaacgtttgcgaatgctggaagtattagtgcaa
caagcgaacctacctcacttgcaagtcatccctcaacaaaagctccatagtaaatcagcg
cttatgcagttgcttgatcaagtaattgatggtggtggcgaaggattaatgctgcaccac
gaagatgcgctatatacgccctcacggagtgacaatgtgttaaagcttaagaagcatcaa
gatgctgaagccatagtgttggcgcatttaccaggtaatggcaagtaccaaggaatgatg
ggctctattcgtgtgcaaatgagcaatggtaaagtatttaaaatcggcagcggcttttct
gatcaagaacgcttgtcaccaccgcccattggggcagtgatcactttcaaatattacgat
ttaaccattaacgggatccccaaattcgccagttatattcgccaaaaaccaagctattaa

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