Entry
Name
ABC transporters - Pseudomonas plecoglossicida
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Pseudomonas plecoglossicida [GN:
ppj ]
Gene
RK21_05267 binding-protein-dependent transport system inner membrane protein [KO:K15554 ]
RK21_01322 molybdenum ABC transporter periplasmic molybdate-binding protein [KO:K02020 ]
RK21_05649 binding-protein-dependent transport system inner membrane protein [KO:K02011 ]
RK21_04826 binding-protein-dependent transport system inner membrane protein [KO:K02011 ]
RK21_01098 binding-protein-dependent transport system inner membrane protein [KO:K11070 ]
RK21_01097 binding-protein-dependent transport system inner membrane protein [KO:K11071 ]
RK21_04808 putrescine/spermidine ABC transporter substrate-binding protein [KO:K11073 ]
RK21_04979 putative ABC transporter periplasmic polyamine-binding protein [KO:K11073 ]
RK21_03232 putrescine/spermidine ABC transporter substrate-binding protein [KO:K11073 ]
RK21_04805 binding-protein-dependent transport system inner membrane protein [KO:K11075 ]
RK21_04722 glycine/betaine ABC transporter substrate-binding protein [KO:K02002 ]
RK21_04729 glycine betaine/L-proline ABC transporter periplasmic binding protein [KO:K02002 ]
RK21_05164 glycine betaine ABC transporter substrate-binding protein [KO:K02002 ]
RK21_03661 glycine betaine ABC transporter substrate-binding protein [KO:K02002 ]
RK21_04065 glycine betaine ABC transporter substrate-binding protein [KO:K05845 ]
RK21_04066 binding-protein-dependent transport system inner membrane protein [KO:K05846 ]
RK21_03955 binding-protein-dependent transport system inner membrane protein [KO:K17316 ]
RK21_03954 binding-protein-dependent transport system inner membrane protein [KO:K17317 ]
RK21_03159 binding-protein-dependent transport system inner membrane protein [KO:K17322 ]
RK21_03158 binding-protein-dependent transport system inner membrane protein [KO:K17323 ]
RK21_04964 binding-protein-dependent transport system inner membrane protein [KO:K02037 ]
RK21_02917 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein [KO:K02044 ]
RK21_04121 phosphonate ABC transporter periplasmic phosphonate-binding protein [KO:K02044 ]
RK21_00128 amino acid ABC transporter periplasmic amino acid-binding protein [KO:K09969 ]
RK21_04746 amino acid ABC transporter periplasmic amino acid-binding protein [KO:K23055 ]
RK21_05668 branched chain amino acid ABC transporter ATP-binding protein [KO:K01995 ]
RK21_00401 leucine/isoleucine/valine transporter, ATP-binding subunit [KO:K01995 ]
RK21_02884 branched-chain amino acid ABC transporter substrate-binding protein [KO:K01995 ]
RK21_05669 Branched chain amino acid ABC transporter ATP-binding protein [KO:K01996 ]
RK21_00400 branched chain amino acid ABC transporter ATP-binding protein [KO:K01996 ]
RK21_05201 binding-protein-dependent transport system inner membrane protein [KO:K02072 ]
RK21_04055 binding-protein-dependent transport system inner membrane protein [KO:K12370 ]
RK21_00954 binding-protein-dependent transport system inner membrane protein [KO:K13894 ]
RK21_02140 binding-protein-dependent transport system inner membrane protein [KO:K13894 ]
RK21_04489 iron-hydroxamate ABC transporter substrate-binding protein [KO:K06858 ]
RK21_03270 LolC/E family lipoprotein releasing system, transmembrane protein [KO:K09808 ]
RK21_03272 LolC/E family lipoprotein releasing system, transmembrane protein [KO:K09808 ]
RK21_03271 lipoprotein releasing system ATP-binding protein [KO:K09810 ] [EC:7.6.2.-]
RK21_00889 macrolide ABC transporter ATP-binding protein [KO:K05685 ] [EC:7.6.2.-]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
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