Pectobacterium atrosepticum 21A: GZ59_10310
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Entry
GZ59_10310 CDS
T03293
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pato
Pectobacterium atrosepticum 21A
Pathway
pato03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GZ59_10310 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pato03400
]
GZ59_10310 (recD)
Enzymes [BR:
pato01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GZ59_10310 (recD)
DNA repair and recombination proteins [BR:
pato03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GZ59_10310 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecD_N
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
PhoH
Herpes_Helicase
AAA_16
AAA_28
DEAD
UvrD_C
T2SSE
CbiA
MukB
AAA
FtsK_SpoIIIE
DUF87
SRP54
TrwB_AAD_bind
AAA_17
Flavi_DEAD
ResIII
NTPase_1
ATPase
Motif
Other DBs
NCBI-ProteinID:
AIK12893
LinkDB
All DBs
Position
1110849..1112720
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AA seq
623 aa
AA seq
DB search
MIALLEIAQARRLLRPLDIQFARMLADDTQPELLLAAACLSAHSGAGHVCLPLENLQAQT
LFDGREPELAQQLITESGINTVAVWQQRLLASDAVSDGSKPTPLVLQGEKLYLQRSWQSE
GRVAQFIASERDSMSIDEPAIRAVLDRLFPETGEAIDWQKVAAAVALTRRIAVISGGPGT
GKTTTVAKLLAALIELNTGEALRIQLAAPTGKAAARLTESLGLALHRLAVDQRQRDAFPK
EATTLHRLLGAVTDSQRLRHHQGNPLHLDVLIVDEASMVDLPMMANVIAALPAQARIIFL
GDRDQLASVEAGAVLGDICRFAEAGYSRARAQQLQRLTGCALDESGPEGQTTVSDSICLL
RRSYRFDPHSGIGQLALAVNGGDDARVRAVLNGEFADITCSPLAEAEEYQAMLAQCVEGY
RDYLDLIAAGATPDAVLHAFQRYRQLCALREGPFGVAGLNQRIEQALHQSGLIQRSRNPL
NRWYPGRPVMIGRNDAALGLFNGDIGIAMMGGNGELRVFFPLPNGETKDVTPSRLPPHET
AYAMTVHKSQGSEFDHTALVLPNHYLPVLTRELVYTAITRARQRLSLYTDVRILCRAVKT
PTQRYSGLEERISAFINGTPLPK
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgattgccttgcttgaaatagcgcaagcgcggcggttgctgcgcccgctggatatccag
tttgccagaatgttggcagatgacacgcagcctgaactgttgctggccgccgcctgcctg
agtgcacattcgggcgcggggcacgtgtgtctaccgttggaaaacttgcaggcgcagacg
ctatttgacggtcgtgaacctgaactggcgcaacagctgatcacagaatctgggatcaac
acggttgccgtatggcagcaacgtttgctggcgtccgatgccgttagcgacggcagcaaa
ccgacgcctctggtgctgcaaggcgaaaaactttatttacagcgtagctggcagagtgaa
gggcgcgtagcgcagtttatcgctagcgagcgtgattctatgtcgatcgatgaacctgcg
attcgggcggtgctggatcggctgtttcctgagacgggcgaggcaatagactggcagaaa
gtggctgccgctgttgccctgacgcgccgtattgcggttatttccggcggtccggggacg
gggaaaacgacgacagttgccaagctgctggcggcgctgattgagctgaatacgggggag
gcgttacgtattcaattagctgcgcctaccggaaaggcagccgcgcggctaacggagtcg
ctggggctggcattgcaccgtctggcggtggatcaacggcagagagacgcgtttccgaag
gaagcgacaacgctgcatcgccttttaggcgcggtaacggatagccagcggttgcgtcac
catcagggaaatccgcttcatctggatgtgctgattgtggatgaggcttcgatggtcgat
ttgccgatgatggcgaatgtgatcgccgcacttccggcacaggccagaattatctttctg
ggcgatcgcgatcagctggcgtccgtcgaggcgggggcagtgttaggtgacatctgtcgt
tttgctgaggctggctatagccgtgcgcgggcgcaacagttgcagcggttaacgggctgc
gcactggatgagagcggcccggaaggacagacgacggtcagtgacagtatttgtctgtta
cgccggagctatcgtttcgatccacattccggtattgggcaactggcgctggcggtgaac
ggcggcgatgatgcccgcgtgcgtgcggtgctgaacggcgagtttgctgatatcacctgt
agcccgttagccgaggctgaagagtatcaggcgatgctggcacagtgcgtcgaaggctat
cgtgattatctcgatcttattgcagcgggagcgacaccggatgctgtgctgcatgctttc
cagcgttatcgccaactgtgtgcgttgcgcgaagggccgtttggcgtagcgggactcaat
cagcgcattgagcaggctttgcatcagtctgggctgattcagcgtagtcgcaacccactt
aaccgctggtatcccggtcgaccggtgatgattggacgtaatgatgccgcattgggtctg
ttcaatggcgatattggtatcgctatgatggggggaaatggggaactgcgcgtgtttttc
cccttgccgaatggcgaaaccaaagatgttacgccaagccgtctgccgccgcatgaaacg
gcttatgcgatgacggtgcataaatcgcagggatcggagttcgatcatactgcgctggtg
ctgccgaaccactatttacccgtgctgacgcgggagttggtgtataccgccatcacgcgt
gcgcgccagcgtttgtcgctctataccgatgtccgaattctctgtcgggcggtgaaaacg
ccaacgcagcgctatagcgggttggaagagagaattagcgcgttcattaatggaacgccg
ttgcctaaataa
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