Pectobacterium atrosepticum 21A: GZ59_38520
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Entry
GZ59_38520 CDS
T03293
Symbol
hepA
Name
(GenBank) RNA polymerase associated protein
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pato
Pectobacterium atrosepticum 21A
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pato03021
]
GZ59_38520 (hepA)
Transcription machinery [BR:
pato03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
GZ59_38520 (hepA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Allexi_40kDa
Motif
Other DBs
NCBI-ProteinID:
AIK15569
LinkDB
All DBs
Position
4180537..4183440
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AA seq
967 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVNTRMITLLFPASGENRLYSRSDAPITRVMFNPGDT
VTSHEGWQLKIDDVREEKGLLVYCGQRLDDETPAELREVFLDSKLTFNKPQDRLFAGQID
RMDRFALRYRARKHQNEQALQQWGGLRGMRASLIPHQLHIAYEVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRASRVLIVVPETLQHQWLVEMLRRFNLLFSLFDDERYAEAKLD
SSNPFETEQLVICSLGFVQRSAQRFAQLVNTDWDLLVVDEAHHLVWSEESPSPEYQAIEA
LARATPAVLLLTATPEQLGQQSHFARLRLLDPNRFHDYQEFVAEQQQYRPVADAVTLLLA
GEKAQAAELNVLSDLLGEQDIEPLLKSINSDSDDNQKARQELITMLMDRHGTSRVLFRNT
RQGVKGFPQRVLHQIRLPLPAQYQTAIKVSGIMNANKPLETRARDMLYPEQIYQQLEGDD
ATWWNFDPRVEWLLNYLTTNRDEKVLVICAQAATALQLEQVLRTREAIRAAVFHEGLSIL
ERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRIG
QAKEIQVLVPYLENTAQALLVRWYHEGLDAFEHTCPTGRTIYDAHHAQLIERLTTVGEQQ
GLDEFIHTCRQQHDSLKQQLEQGRDRLLEMHSNGGEQAQLLAQAIAEQDNDVNLVTFALN
LFDIVGINQEDRSDNLIILTPSDHMLVPDFPGLPQDGCTITFDRDQALSREDAQFISWEH
PLIRNGLDLVLSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTPV
RLLMDRKGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQSDVHAMLQQAEALVETQARQ
LITEAQQQADLQLRRELERLEALKAVNPNIREDELTALENQREQVLSNLHEANWRLDAIR
LVVVTHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcagcgctggatcagcgatacggaaagcgaacttggactggga
acggttgttgccgtcaatacgcgtatgataacgctgcttttccctgccagcggtgaaaac
cgactttattcccgcagtgacgcccccatcacccgtgtgatgttcaatcccggcgacacc
gtcaccagccatgaaggctggcagctcaagattgatgacgtgcgagaagaaaaagggttg
ctggtgtattgcggccaacgcctggacgacgaaacgccagcggaactgcgtgaagtcttt
ctggacagcaaactcacgttcaacaaaccgcaagatcgcctgttcgcaggacagattgat
cgtatggatcgctttgcgctgcgctatcgcgcccgtaagcatcagaacgagcaggcgctg
caacaatggggcggtttgcgcggcatgcgcgccagcctcatcccccaccagcttcacatc
gcttatgaagtcggccaacgccatgcgccacgcgttttgctggcggacgaagtcggtcta
gggaaaaccattgaagccggtatgatcatccaccagcaattgctggcgggtcgtgccagt
cgcgtgctgattgtcgtaccggaaaccctgcaacatcagtggctggttgaaatgctgcgc
cgctttaacctgctgttctcactgtttgacgacgagcgctatgccgaagccaagctggac
agcagcaatccgtttgaaactgaacagttggtgatctgctcgctgggatttgttcaacgc
agcgcccagcgctttgcgcagttagttaacaccgactgggatctgctggtcgtggatgag
gcccaccatctggtctggagtgaagaaagccccagcccggaatatcaggctattgaagcg
ctggcacgcgccactccggccgttttgctattaaccgcaacgccggaacagcttggccag
cagagccactttgcacgcttacgcctgctcgatcccaaccgtttccatgactatcaggaa
ttcgttgccgaacagcagcagtaccgtccggtcgccgatgccgtcacactgctgttagcg
ggtgaaaaagcccaagcggctgaactgaatgtgctaagcgatctgctgggcgaacaggac
attgagccgttgctgaaatccatcaacagcgacagcgatgacaatcagaaggcgcgtcag
gaactgatcaccatgttgatggatcgccacggcaccagccgtgtgttgttccgcaatacg
cgtcagggcgttaaaggcttcccgcagcgtgtcctgcatcaaatccgcctgccgctgcca
gcgcagtaccaaacggcaatcaaagtttccggcattatgaatgcgaacaagccactggaa
acccgcgcgcgcgatatgctgtaccctgagcaaatttatcaacagctcgaaggggacgat
gccacctggtggaacttcgatccgcgcgtggaatggttgctgaactacctgaccaccaac
cgtgatgaaaaagtgttggtgatctgcgcacaggcagcgacagcgctccagttggagcaa
gtgctgcgcacgcgtgaagccattcgcgccgccgtcttccatgaagggctgtctattctg
gaacgtgaccgcgccgccgcctattttgcatctgaagaagaaggcgcacaggtgctgatc
tgttcagagatcggatccgaaggccgtaatttccagtttgccagccatttagtgatgttc
gatctgccgttcaaccccgacttgctggagcagcgtattggccgtctggaccgcatcggg
caggcaaaagaaattcaggttctggtgccgtatctggaaaacaccgcccaggctctgctg
gtacgctggtatcacgaagggctggatgcgtttgagcacacctgcccaacaggtcgcacc
atctatgatgcgcaccatgcacagttaatcgagcgactgacgaccgtcggtgaacagcag
ggactggatgagtttatccatacctgccgccaacagcacgacagcctgaagcaacagctt
gaacaaggtcgcgatcgtctgctggaaatgcattctaacggcggcgaacaggctcagctg
ttggcacaagccattgccgaacaggataatgacgtcaacctggtgacattcgccctgaac
ctgtttgatatcgttggcatcaatcaggaagatcgcagcgataatctgatcattctgaca
ccatccgatcatatgctggtgccggatttccccggtctgccgcaggacggttgtacgatc
accttcgatcgcgatcaggctctctcacgcgaagacgcgcagtttatcagttgggaacac
ccgctcatccgtaacgggctcgatctggtgctgtccggcgataccggaagctgtgcggtt
tccttgctgaaaaataaagcgctgccggtcggtacactgttggcagaactggtttacgtt
gtggaagctcaggcaccaaaacacctgcaactgacccgcttcctgccaccaacaccggtt
cgactgctgatggatcgtaaaggcacgaatctggccgcacaggtggagtttgagagcttt
aaccgtcagctcaatgcggtgaaccgccatacttccagcaagctggtgaatgcagtgcaa
tccgatgttcacgctatgctgcaacaggcagaagcgttggtggaaacgcaggcgcgccag
ctaatcactgaagcgcaacagcaggccgatctgcaactgcgccgcgagctggaacgtctg
gaagcgctgaaagccgtcaatcctaacattcgtgaagatgagctgaccgcgctggaaaat
cagcgcgagcaggtgctgagcaatctgcacgaggccaactggcgtctggatgcgatccgt
ctggtcgtggtaacgcatcagtaa
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