Pectobacterium atrosepticum 21A: GZ59_42290
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Entry
GZ59_42290 CDS
T03293
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pato
Pectobacterium atrosepticum 21A
Pathway
pato03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pato00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZ59_42290 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pato03019
]
GZ59_42290 (recQ)
03400 DNA repair and recombination proteins [BR:
pato03400
]
GZ59_42290 (recQ)
Enzymes [BR:
pato01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GZ59_42290 (recQ)
Messenger RNA biogenesis [BR:
pato03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GZ59_42290 (recQ)
DNA repair and recombination proteins [BR:
pato03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GZ59_42290 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AIK15930
LinkDB
All DBs
Position
complement(4567708..4569534)
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AA seq
608 aa
AA seq
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MSTAEVLNKEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQFEVMAGCRTGQIKLLY
IAPERLTTESFLDHLAHWQISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIAL
TATADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPLDQLWMFVQAQRGKSGI
IYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPAGPQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEACGNCDICLDPPKRYDGLVEAQKAL
SCVYRVGQRFGIGYIVEVLRGANNQRIRDFGHDKLPVYGIGKDKSQEHWVSVLRQLIHLG
LLNQNITMHSAVQLTEPARPVLRGEMPLQLAVPRVINLKPRANQKSYGGNYDRKLFAKLR
KLRKSIADEDNIPPYVVFSDATLLEMAELMPITAGELLNINGVGHRKLERFGAPFMNMIR
DHVDNDDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggaagtattgaataaggaagcgctggcggttcaggttctacgggacacg
ttcggctaccagcaattccgaccgggtcagcaggaaattatcagcgcgacgctcagtggg
caggattgtctggttatcatgccgacaggcggcggtaaatcgctgtgctaccaaatcccc
gctctggtgatggacgggctgacgctggtggtatccccgctgatttctctgatgaaagat
caggttgatcagcttcaggcctatggtgtctccgccgcttgcctcaattcgacgcagacg
cgtgaacagcagtttgaagtgatggcgggctgtcgtactggtcagattaagttgctttat
attgcgccggaacgcctgacgacagaaagctttctcgatcatctcgcccactggcagatt
tcactgatcgcggtggatgaagcgcactgtatttcccaatggggccacgatttccgccct
gaataccgagcgctggggcagattaaacagcgttttcctcaccttcctttcattgcactg
acggccaccgccgacgagaccacgcggaacgatatcgttcgcctgttggatcttcagtcg
ccgctgatccagatcagcagttttgaccgcccgaatattcgctacacgctggtggagaag
ttcaaaccgctcgatcagctctggatgttcgtgcaggcgcagcgcggaaaaagcggcatc
atttactgtaatagccgttcccgcgtggaagatatcagcgcccgtttgcaggcccgtggg
ctgagtgcgggggcttatcacgccgggctggacaatgaacgacgcgcacaggtacaggaa
gcgttcctgcgtgacgatcttcaggtggtggtagcgactgtcgcgtttggtatgggtatc
aacaagcctaacgtgcggttcgtagtgcattttgatattccgcgcaatatcgaatcctac
tatcaggaaacgggacgtgccgggcgtgatggcctcgccgcagaagccgcgctgttttac
gatccggcggatatggcatggctgcgtcgctgtctggaagaaaaacccgccgggccgcag
ttggatattgaacgtcataagctcaatgcgatgggcgcgtttgccgaggcgcagacctgc
cgccgtctggtgctgctgaactatttcggtgaagggcgccaagaggcctgcggtaactgc
gatatttgtctcgatccgccgaagcgttacgatgggctggttgaggcgcaaaaggcgctc
tcctgcgtgtatcgggtcgggcagcgctttggcataggatatatcgtcgaggtgttgcgc
ggtgcgaataaccaacgtattcgcgacttcggccatgacaaattgccggtttatggcatt
ggtaaggataaatcgcaggaacattgggtcagcgtgctacgccaactgattcatctgggg
ttgttgaaccagaatattacgatgcattctgccgtacagcttaccgaacctgcgcgccca
gtattgcggggagaaatgccgctgcaactggccgtgccgcgtgtgattaacctgaagccc
cgcgctaatcaaaaatcttacggcggaaattacgaccgcaagctgtttgccaaattgcgt
aaactgcgtaaatccatcgcggacgaagacaatattccgccttacgtggtgttcagtgat
gccacgctgctggagatggcggaactgatgccgatcaccgcgggcgaactgctgaatatc
aacggggtaggacaccgcaaactcgaacgtttcggtgcacctttcatgaacatgattcgc
gatcatgtcgataatgacgacgagtga
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