Prunus avium (sweet cherry): 110761372
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Entry
110761372 CDS
T05161
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03020
RNA polymerase
pavi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110761372
09124 Replication and repair
03420 Nucleotide excision repair
110761372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110761372
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110761372
Enzymes [BR:
pavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110761372
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110761372
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110761372
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
110761372
NCBI-ProteinID:
XP_021819526
UniProt:
A0A6P5T0C7
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSVMRCVCFNCSKILVDEDDHK
FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI
EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR
PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL
EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKTEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ
LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP
GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV
NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA
EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYNPQSAKYSPSSAYSP
SSPRMSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPGSPFTSGVSPDYSPSSPQY
SPSAGYSPSQPGYSPSSTSQYTPQTSEKDTKDDRSTR
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgcttcccattctcgccggcggaggttgccaaagtccgctgtgttcagttc
ggcattctgagcccggacgaaataaggcaaatgtctgtagtgcagattgagcacagcgag
accatgttgggaggcaaacccaagacggcaggtttaagtgatcctcggcttggtacaatt
gacagaaagatgaagtgcgaaacatgtacggccaacatggctgagtgcccgggccatttt
gggcaccttgagcttgccaaaccaatgtttcacattggtttcatgaagacggtgttgtca
gtaatgcgatgtgtttgcttcaattgctcaaaaattctagtcgatgaggatgatcacaag
tttaagcaggctttgagaattaagagcccaaaaaataggctaaaaaagattttggatgca
tgcaaaaacaaaaccaaatgtgatggtggtgatgaaattgatgtccaaggtcaggaatct
gaagaacctgtaaagaaaagtcgtggcggctgtggtgctcagcagcccaagctctctata
gagggtatgaaaatgaatgcagagtacaaagcccaacggaagaaaagtgatgaccaggaa
cagctccctgaacctgtggaaaggaaacagacacttactgcagaaagggttcttagtgtc
ttaaaaaggataagtgatgaggactcccagttattgggattgaaccctaaatatgctcgt
cctgactggatgattttacaagttctgcctattcctccacaacctgtgagaccctctgtg
atgatggacacctcatccaggagtgaggatgatttaacacatcagttagccatgattatt
cgtcacaatgagaatctgaggagacaggaaagaaatgggtcacctgctcatataatttca
gagtttgcacaactgttgcaattccacatagccacatattttgacaatgagttgcctgga
ctaccgagggctactcagagatcagggaggcctattaaatcaatatgtagtaggcttaag
gcaaaggaaggcagaataagaggaaatttaatggggaagcgagttgatttctcggcacgg
acagtgattactcctgatccaaacataaacattgatcaattaggagtaccatggagtatt
gctttgaatctcacgtacccagagactgtgactccatataatattgaaaggttgaaggag
cttgttgagaatgggccccatcctccacctggtaaaactggtgcgaagtatataatacga
gatgatgggcaaaggcttgatcttcgttacttgaagaaaagcagtgatcatcatttggag
cttggatataaggtggagcgtcatttgaatgatggagactttgtcctcttcaatcgtcaa
cctagtctccataaaatgtctattatggggcacagaatcaagatcatgccgtactcaact
tttcgcttgaatttgtctgtgacctctccatacaatgccgactttgacggggacgagatg
aacatgcatgttcctcagtcttttgaaactagggcagaagtactggagctcatgatggtg
cccaagtgcatagtgtctcctcagtcaaatcgacctgtgatgggaattgtgcaggatacc
cttttagggtgtcgtaagattaccaagagggataccttcatagagaaggatgtttttatg
aatattttgatgtggtgggaggattttgatggaaaagttcctgctcctgcaattttgaag
ccacggccattgtggactggcaagcaagtcttcaatcttataataccaaaacagataaat
ctccaaaggacttctgcatggcactcggaagcagaaagtggcaacattacccccggagat
acttttgttagaatagagaagggggagctacttgctggaacactttgcaagaagacactt
gggacatctactggaagtctgatacatgtcatatgggaagaagttggcccagatgcagct
cgcaagttcctgggtcatacccaatggcttgttaactactggctactccaaaatgctttt
agcattggaattggagatacaattgctgatgctgcaacaatggagaaaatcaatgaaaca
atttcaaaggcgaaaaatgaagtgaaagatcttataagtaaagcccaatccaagcagctg
gaggctgaacctggacgaaccatgatggactcattcgaaaacaaagtgaaccaggttttg
aatagggctcgtgatgatgctggaagtagtgctcaaaagagtttatcggagagcaacaat
cttaaagccatggttacagcagggtccaaagggagttttatcaacatatcccagatgact
gcttgtgtggggcagcagaacgttgagggtaagcgtatcccttacgggttcatagaccgg
acattgccccacttcactaaagatgattatggaccagaaagtcgtggatttgtagaaaat
tcctacctgcgtgggttaactccacaggagttcttttttcatgcaatgggtgggagggaa
ggtcttatagataccgcagtcaagacatctgagactgggtacattcaaaggagactggtg
aaggctatggaggatattatggtcaaatatgatggcactgtcagaaattcattgggggat
gttatacagtttctttacggggaagatgggatggatgctgtttggatagaatcacaaaag
ctggattctttaaagatgaaaaaaacagaatttgataagactttttcgtatgagcttgat
gatgaaaattggaatccagactacatgttgcatgaacatgttgaggatctcaaaactatt
agagagtttcgcaatgtgtttgatgcagaggttcagaaacttgaaacagacagattacaa
cttggaacagagatagcagtaacaggtgataattcttggccattgcctgttaacctgaag
aggctcatttggaatgcacaaaaaacctttaagattgacttccgaaggacttccgatatg
cacccgatggaaatcgtggaagctattgataagctccaggagaggctgaaggttgttcct
ggtgatgacttgttgagtgttgaagctcaaaagaatgctacactgtttttcagcatttta
cttcgcagcactttcgctagcaaacgggtgttggatgagtacaggcttactcgtgaagca
ttcgagtgggttattggggagatagagtcacgcttcctgcaatcacttgtagcacctggc
gaaatgattggttgcgttgctgcacaatctattggtgagcctgccactcagatgacactg
aatactttccactatgctggtgtgagtgcaaagaatgttaccctaggtgttcccaggttg
agggaaattattaatgtggctaagagaatcaaaacaccatctctgtctgtctacttaaag
cctgaagctaataaaacaaaggagagggcgaaaaatgtccagtgtgctttggaatacacc
actctccgaagtgtaactcaagctacagaagtgtggtatgatccagaccccatgagcaca
ataattgaagaggatgttgattttgtcaactcttactatgaaatgccagatgaagaggtt
aaccctgataaaatttctccttggttgcttcgcattgagttgaatcgcgaaatgatggtg
gataagaagttgagcatggctgacattgctgagaagatcaatcttgaatttgatgatgat
ttaacttgtatattcaatgatgacaatgcggaaaagttgatccttcgaatccgtatcatg
aatgctgaagctccaaaaggggaattggttgatgaatccgctgaagatgatgtatttttg
aagaagattgagagtaacatgctgacagaaatggctcttcgaggtatcccagatattaac
aaagtgttcattaaacatggtaaagttaacaagtttgatccgaatgaaggatttaaagca
gagcaagagtggatgctggatacagaaggtgttaatcttttagctgtcctgtgccatgat
gatgttgatgccaggaggacaacgagtaatcacttgattgaaattcttgaaattcttgga
attgaggcagttcgtcggtcactgttggatgagttgcgtgttgttatatctttcgatggg
tcttatgtgaattatcggcatctggctatcctttgtgataccatgacttatcgtgggcac
ttgatggccattactcgtcatggcatcaatcgaaatgacaccggtcccatgatgaggtgc
tcatttgaagaaactgtcgatattcttcttgatgctgcagtgtttgcagaaacagattat
ttgagaggtgtaactgaaaacataatgttaggccagcttgcacccattggcacaggagac
tgtgccctgtatctcaatgacgagatgttgaagaatgcaattgaactccagctacctagt
tatatggatggtcttgatttcggtatgacaccatctcgttctccagtgtcgggaactcca
tatcatgagggcatgatgtctccaaattatttgctgagcccaaaccttcgtctgtcaccc
atttcagatgcccagttttctccctatgttggaggaatggcattctctcctacttcatct
ccgggctacagcccatcatcccctggctacagtccgtcctcccctggatacagtcccaca
tcccctggttatagtcccacctcgcccgggtacagccccacttctcctgggtacagtccc
acctctccaacctatagtcctagttctccaggttatagtccaaccagtccggcctattct
cctacaagtccatcatactcacccacctcacccagctatagccccacttctccaagttac
agtcccacttctccaagttacagtcccacttctccaagttacagtccaacttcaccaagt
tacagtccaacatcacctgcttacagcccgacatcacctgcttacagcccgacttcacct
gcatatagtcccacatcaccttcctacagccctacatcgccttcctatagccctacatca
ccttcctacagcccaacgtcgccctcctacagccccacatctccatcctacagcccaacc
tcaccggcctacagcccaacttctcctggttacagcccaacttctcccagctatagcccc
acatctccaagttacaatcctcagtcagccaaatacagtccatcgtcggcatactctcca
agcagtccaagaatgtcaccatctagtccatatagtcctacgtctccaaattacagccca
acttcaccatcgtattcacctacgtctccatcttactctccttcaagccccacgtacagt
cctggaagcccatttacctctggagtgagcccagattatagtccaagttctccacaatac
agtccaagtgctgggtactcaccgagtcaacctgggtactcgccgtcatctactagccag
tacacgcctcaaacgagcgagaaggatactaaggatgacagaagcactcgttaa
DBGET
integrated database retrieval system
