KEGG   Prunus avium (sweet cherry): 110764477Help
Entry
110764477         CDS       T05161                                 

Definition
(RefSeq) DNA ligase 6-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03030  DNA replication
pavi03410  Base excision repair
pavi03420  Nucleotide excision repair
pavi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110764477
   03410 Base excision repair
    110764477
   03420 Nucleotide excision repair
    110764477
   03430 Mismatch repair
    110764477
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pavi03032]
    110764477
   03400 DNA repair and recombination proteins [BR:pavi03400]
    110764477
Enzymes [BR:pavi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110764477
    6.5.1.6  DNA ligase (ATP or NAD+)
     110764477
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     110764477
DNA replication proteins [BR:pavi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    110764477
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     110764477
DNA repair and recombination proteins [BR:pavi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     110764477
   NER (nucleotide excision repair)
    Other NER factors
     110764477
   MMR (mismatch excision repair)
    Other MMR factors
     110764477
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C RMMBL UBA_4 Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 110764477
NCBI-ProteinID: XP_021823155
LinkDB All DBs
Position
Unknown
AA seq 1379 aa AA seqDB search
MASSSSSSTTKTQTLDSTRLFLTALATFSHQPNPPQLSFPPIPSTFPHSKLIPKTRFFVD
AFRHAGDHSVSYFLSHFHSDHYGGLSPNWAKGIVFCSQTTARLLNEVLKVSSLFVVALPL
DEAVVIDGCEVVLIDANHCPGAVQFLFKVPGLNGEFERYVHTGDFRFSGSMKSDPFLCEF
VGSDAIFLDTTYCNPKFVFPLQEESVNYIASLIETVGGEYKSSMKNVLFLVATYVIGKEK
ILLEIARRCNRKVHVDARKMAVLRVLGYGESGVFTEDECESDVHVVGWNVLGETWPYFRP
NFVKMKEIMVEKGYSKVVGFVPTGWTYEVKRNNFSVRSKDSFEIHLVPYSEHSNYDELRE
YVRFLKPKHVIPTVGLDVEKLDSKHANKMQKHFAGLVDEMANKKEFLRGFRLGSTEVGDD
VENESNNGPIEGLDLEKEAMPSDKDTVHMELSSSLQEPDLQNPVVLNDEEAEKIIQELRD
CLPTWVTQEQMLDLIGSSGGDIVESVSNFYERETEFHEQVISSTIAVSESQTSSLCDSGS
LPKGGSVKSSPYGSTDVPSSQEYISLKPRNVIKSGISPGKRARNTNNKVNKKVKLNSKLD
SRGPKQLAITKFFSKVLPDVQETPEIGSMDEQNLKDESLPHDDTKSYRDEIDQFLQIIDG
TESLESYAATILRKTNGDINEALNIYYCNREVRSGKNEAGLVVDSGKMKPTADSSVEVSL
QENVKTTVLSLPPEKYNPTEDACWSCGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFR
SLLALAPEDVLPSVYLCTNKIAADHENVELNIGGSLVTSALEDACGTSRSKIREMYNELG
DLGDVAQACRQTQKLLAPPSPLLIKDVFFALQKISVQTGSGSTGRKKSLIVNLMRSCREK
EMKFLVRTLVRNLRIGAMMKTVLPALAQAVVMNSSHNLNHEGVVQSWKDRLQRHSAAVVE
AYNVLPNLDLVVPSLMDKGIGFSSSTLSMVPGIPIKPMLAKITNGVPQALKLLGNKAFTC
EYKYDGQRAQIHKLVDGSVRVFSRNGDESTSRFPDLIKIINESCKPDAVTFILDAEVVAI
DRKNGLKLMSFQELSSRGRGSRDTSITLDSIKVDICVFVFDIMFANGQQLLGFPLRKRRK
YLKDLFYDEKLGYFEYAKEMTVEADDACLTSEATLTKINCFLENAFLSSCEGIMVKSLDV
DAGYSPSKRTDTWLKVKRDYIEGSNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTED
FQSVCRVMSGFSDSFYTEMKSFFSGDKILSRKPPYYKTAEAPDMWFPPELVWEIRGADFT
VSPVHQAAVGLVHPSRGISIRFPRYVRTVADRKPDECSTSEDIAAMFCSQTRKMDVAED
NT seq 4140 nt NT seq  +upstreamnt  +downstreamnt
atggcctcctcctcctcctcctccacaaccaaaacccaaaccctagattccacccgcctc
ttcctcactgccctcgccaccttttcccaccaacccaaccctccccagctctctttccct
ccaattccctccacattccctcactccaaactcatccccaaaacccgtttcttcgtcgat
gcatttcgccacgcaggcgatcactccgtctcctacttcctctcccatttccactccgat
cactatggcggcctctcccccaattgggctaaaggcattgtcttttgttcacagaccacc
gctcgtcttctcaacgaggtgctcaaggtctcttcgcttttcgtggtcgctttgccgctc
gacgaagcagtggtaatagatggctgtgaggttgtgcttattgacgcgaatcactgtccg
ggtgcggttcaattcttgtttaaagttccgggtttgaatggagagtttgagaggtatgtt
catactggcgattttcggttttctggttcgatgaagtcagacccttttttgtgtgaattt
gtgggttcggatgctattttcttggacaccacgtattgtaatccgaagtttgtgtttcca
ctgcaagaagaatctgttaattatattgctagtttgatagaaacagtagggggtgaatat
aaaagttctatgaaaaatgttttgtttcttgtagctacttatgttattgggaaagagaag
attttgctggaaattgctcgtaggtgtaatcgtaaagtacatgtggatgctcgaaaaatg
gcggtgttgcgtgttttgggctatggagagagtggggtatttacagaggatgagtgtgaa
agtgatgtacatgttgttgggtggaatgtcttgggcgagacttggccatattttaggcct
aattttgtgaaaatgaaggagattatggttgagaaaggatactctaaggttgtgggtttt
gttcctactggttggacttatgaagtgaagcgtaacaacttttcagtgaggtcaaaggat
tcgtttgagatccatcttgtaccgtatagtgaacattctaactatgatgaacttagggaa
tatgtgaggtttttgaaaccaaagcatgttattcctacggtgggcttggatgttgaaaag
cttgatagtaagcatgccaataaaatgcaaaagcattttgctgggttagtcgatgaaatg
gcaaacaagaaagagttcttgaggggctttcgtcttggatccacagaagttggtgacgat
gttgaaaatgagtccaacaatggtcctattgaagggctggatctagagaaagaggcaatg
ccatctgataaggatactgtgcacatggaattatcatcttctctacaagaacctgatctg
caaaatccagtggtattaaatgatgaagaagcagagaaaatcattcaagaacttcgtgat
tgtttgcccacatgggtcactcaagagcagatgttagatctgattggaagctcaggaggg
gacattgttgaatcagtttccaatttttacgaacgcgaaacagaatttcatgagcaagta
atttcttctacaattgctgtttctgaatcccagaccagctcactttgtgactctggatca
ctcccaaaaggaggttctgttaagagcagtccatatggaagtactgacgttccttcaagt
caagaatatatctcactgaagccaaggaatgtaattaaaagtggaatttctcctggaaaa
agggcaagaaacactaataataaggtaaacaaaaaagttaaattaaattccaaattggat
tcacgtgggccaaagcaactggcaataacaaagttttttagtaaagttttgcctgatgtt
caagaaactccggagattggatcaatggatgaacaaaaccttaaagatgaaagtttgccc
catgatgacaccaaatcatacagggatgagatagatcagtttcttcagataatagatggt
actgaatcattagaaagctatgctgccaccattcttaggaagacaaatggagatatcaat
gaggcactgaatatatattactgtaatcgtgaggttaggtctggtaaaaatgaagcaggg
ttggtggttgattcagggaaaatgaagccaacagctgattcatctgtggaggtatcatta
caagagaatgtaaaaacaactgttctgtcattaccgccagaaaaatacaatcctacagaa
gatgcgtgctggagctgcggacagcgcgctccatatttacatcttgcacgaacttttgac
ttacttgaggatgaaaaaggcaagataaaagctacttctatgctctgcaatatgttcaga
agtttgcttgccttggcacctgaggatgtgctgccttcagtgtatttgtgcacaaataag
attgctgcagaccatgaaaatgtggagctaaacattggtggcagtttggtcacatcagca
ctggaagatgcatgcggcacaagccgatccaaaataagggagatgtacaatgagttgggt
gatctaggtgatgtggctcaagcatgccggcaaacacagaagctacttgcccctccttca
ccgcttctaataaaagatgtatttttcgcactccaaaagataagtgtacaaacaggtagt
gggagcactggtcgaaagaaaagcctcattgtgaatctcatgcgctcttgtagagagaaa
gaaatgaagtttcttgttagaactttggttaggaatttgcggattggagcaatgatgaaa
actgttctacctgctctggctcaagctgttgtcatgaattcctctcataacttgaatcat
gaaggagtagtacaaagttggaaagataggcttcagcgccattcagcagctgtggtcgaa
gcatacaatgtactgcccaatttggatttggtcgttccttctctcatggacaaaggcatt
ggattctcttcatcaactttgtcaatggttccaggaatacctattaagccaatgcttgca
aaaatcacaaatggtgttccacaagcactaaagctcttaggaaataaagcttttacctgt
gaatacaaatacgatggtcagcgtgcccaaattcacaaattagttgatgggtctgtgcgt
gttttttcacgaaatggggacgaatcaacgtcaagatttccagatctgatcaagataatt
aatgaatcttgtaagcctgatgcagtcactttcatactagatgcggaggtggttgcaatt
gataggaagaatggtctgaagctaatgtctttccaagagttgtcttcacgtgggagaggg
agcagagatacatcaattacattggatagcataaaggtcgacatttgtgtatttgtcttt
gatatcatgttcgccaatggacagcagttgttgggctttcctctgcggaaaagacgaaaa
tatttgaaagatctgttttatgatgagaagttgggttattttgagtatgccaaggaaatg
acagtcgaagcagatgatgcttgtttaaccagtgaagccacgttaacgaagatcaactgt
tttctcgaaaatgcattcctctcctcatgtgaagggattatggttaaatctttagatgtt
gatgctggatattctccatcaaagcgtacagatacatggttaaaggtcaagcgagactac
attgaaggatcaaatgactctcttgatttagtcccaattggagcttggcatggaaacggg
agaaaggcaggctggtacagtccatttcttatggcatgttataaccctgatactgaggat
ttccaaagcgtctgccgtgtcatgtctgggttctcagattcattttacactgagatgaaa
agtttcttttctggagacaagatcttgtccagaaaaccaccttattataaaaccgctgag
gcgcctgatatgtggtttcctccagaacttgtatgggaaattagaggtgcagactttact
gtgtctcctgttcaccaggctgctgtaggtttagttcatccatcacgtggaatttcaatc
agattcccaagatacgttcgcactgtggctgatagaaaaccagatgaatgtagcacatct
gaagatatagctgcgatgttttgttcccagacaaggaagatggacgttgctgaagattga

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