Pseudomonas avellanae: BKM03_08095
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Entry
BKM03_08095 CDS
T05369
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
BKM03_08095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavl03400
]
BKM03_08095
Enzymes [BR:
pavl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
BKM03_08095
DNA repair and recombination proteins [BR:
pavl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
BKM03_08095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
DUF4807
Motif
Other DBs
NCBI-ProteinID:
AVB19214
LinkDB
All DBs
Position
complement(1609192..1610583)
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AA seq
463 aa
AA seq
DB search
MMPGMIKDPFARLGLDREVLTVSQLNGRARVLLEDVFSSIWVEGEISNLSRLASGHVYFT
LKDSGAQVRCALFRQSAARVRQALKDGLQVKVRGKVSLFEGRGDYQLILDTVEPAGDGAL
RLAFDALKAKLSDEGLFSAERKAALPLHPQRIGIISSPTGAVIRDIISVFRRRAPRVELT
LIPTAVQGREAINQIVRALKLADARGFDALILARGGGSLEDLWCFNEEAVARAIDACVTP
IVSAVGHETDVSISDFVADVRAPTPSAAAELLAPDSSDLHRRVDNLHRRLVSRMQDRLMR
ERLRLEGISRRLRHPGERLRQQSQRLDDLDMRLRRAFEQSMHNRQVRLAHMESRLTAQHP
GRTLAFLRQRLDALAERLPRAIREQIKARKLQLQSQMQTLNVVSPLATLGRGYSILLDER
GHAIRNAAQTQPGQRLTARLGEGELQVRVEDNHLTPVTLSLLD
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatgccgggcatgatcaaagaccctttcgcaagactcggcctcgaccgggaagtcctt
actgtcagccagctcaacggccgtgcccgggtgttgctggaggatgtgttcagcagcatc
tgggtcgagggcgagatttccaatctgtcgcgtttggcgtcggggcatgtctacttcacg
ctgaaggattccggcgcgcaagtgcgttgtgcgttgttcaggcagagcgctgcacgcgtg
cgccaggcgctcaaggacggtttgcaggtcaaggtgcgcggcaaggtttcgctgtttgaa
ggccgtggcgattatcaactcattcttgacactgtcgaacctgccggtgatggtgctttg
cgcctggcattcgatgcgttgaaggccaagctcagcgatgaaggactgttcagcgccgag
cgcaaggctgccttgccgctgcacccacaacgtatcgggattatcagttcgccgacgggc
gcggtgatccgcgacatcatcagtgtgtttcgtcgtcgcgcgccacgggtcgagctgacg
ctgatccctaccgccgttcagggccgtgaggcgatcaatcagattgttcgcgcgctgaaa
ctggcggatgccagaggctttgatgccttgatcctcgcccggggcggcggatcgctggaa
gacctgtggtgtttcaacgaggaagccgtggcccgcgccattgacgcctgcgtaacgccg
attgtcagtgccgtcggacatgaaaccgatgtgtccatcagtgacttcgtggccgatgtg
cgagcccctacgccctccgctgcggccgagttgttggccccggattccagtgacctgcac
cgccgcgtcgataacctgcaccgtcggctggtcagccgcatgcaggatcgcctgatgcgc
gagcgtttgcgtctggaggggatttcccggcgtctgcgtcaccccggcgagcggttgcgc
cagcagtcccagcgcctggatgatctggacatgcgcctgcgccgcgctttcgagcagagc
atgcataacaggcaggtgcgtctcgcgcacatggaaagtcgtctgactgcgcagcaccca
ggccggaccctggcctttttgcgtcagcgtctcgatgcgctggccgagcgtctgccgaga
gccattcgcgagcagatcaaggcgcgcaaactgcagctgcaaagccagatgcagaccctc
aacgttgtcagcccgctcgccacactgggccgtggctacagcatcctgctcgatgagcgg
ggtcatgcgatccgtaatgccgcgcagacacaacccggccagcgactgaccgcaaggctg
ggcgaaggcgagctgcaagtacgcgtcgaagacaatcacctcacgcctgtgaccctctcc
cttctggactga
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