KEGG   Pseudomonas avellanae: BKM03_17715Help
Entry
BKM03_17715       CDS       T05369                                 

Gene name
dacB
Definition
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
  KO
K07259  serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Organism
pavl  Pseudomonas avellanae
Pathway
pavl00550  Peptidoglycan biosynthesis
Brite
KEGG Orthology (KO) [BR:pavl00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    BKM03_17715 (dacB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases [BR:pavl01002]
    BKM03_17715 (dacB)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:pavl01011]
    BKM03_17715 (dacB)
Enzymes [BR:pavl01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     BKM03_17715 (dacB)
   3.4.21  Serine endopeptidases
    3.4.21.-  
     BKM03_17715 (dacB)
Peptidases [BR:pavl01002]
 Serine Peptidases
  Family S13: D-Ala-D-Ala peptidase C family
   BKM03_17715 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:pavl01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   BKM03_17715 (dacB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Peptidase_S13 Beta-lactamase2 LppX_LprAFG SdpA DUF2997 BspA_v
Motif
Other DBs
NCBI-ProteinID: AVB20850
UniProt: A0A2S3TD06
LinkDB All DBs
Position
3685772..3687238
Genome map
AA seq 488 aa AA seqDB search
MIKSLRPLLLASILLPLALPSYAAVINTTLPPKVQQALKASKLGDDALSLVMLPLNGPGT
PTVFNADVSVNPASTMKLITTYAALEMLGPTHQWKTEFFTDGTLSNGVLRGNLYLKGGGD
PKLNMEKLWLLMRDLRANGVQQVTGDLVLDRSHFVQPQLPEFNDDGNDENKPFLVKPDAL
MVNLKALRFVTRNDDGRILVSVEPPIATIRVDNQVKAIASKQCTGDVRYNPVTQADGSVN
VTVTGQLGNGCNSQTYLSLLDHPTYAAGAVRAIWQELGGTILGKDRVGVVPANTKLLAKA
FSPDLVEVIRDINKFSNNTMAQQLFLSLGEEFRNEADGDDGKAAQRVIRQWLAKKGITAP
HLVMENGSGLSRAERVSAREMAIILQAAWRSPYAAEFMSSMPLAGLDGTMRKRLKRTPLL
GEAHIKTGTLNTVRAIAGFSRDSNGNTWAVVAILNDPRPFGASSILDEVLIDLYRQPKLA
NTTVSIQQ
NT seq 1467 nt NT seq  +upstreamnt  +downstreamnt
atgatcaagtcgctccgtccattgttgctcgcctcgatacttctgccactggctctgccc
tcctacgccgccgtcatcaacaccacgctgccccccaaggttcaacaggccctgaaagcc
agcaagctcggcgatgatgcgctctcgctggtcatgctgccgctcaatggtcccggcaca
cccaccgtgttcaacgccgatgtgtcggtgaacccggcatcgaccatgaagctcatcacc
acctacgctgcgctggaaatgctcggcccgacccatcagtggaaaaccgaattcttcacc
gacggcaccctgagcaacggcgtgctgcgcggcaacctgtacctcaagggcggcggcgac
cccaagctgaacatggaaaagctctggctgctgatgcgtgacctgcgcgccaatggcgtg
cagcaggtgaccggtgacctggtgctggaccgcagccatttcgtgcagccgcaattgcct
gagttcaatgacgacggcaacgatgaaaacaagccgtttctggtcaagcccgacgcactg
atggtcaacctcaaagcgttgcgctttgtgacgcgcaacgatgacggcagaatcctggtg
tcggtggagccgccgattgccaccattcgtgtcgataaccaggtcaaggccatcgcctca
aaacaatgcacgggcgatgtgcgctacaacccggtgactcaggctgacggcagcgtcaat
gtgaccgtgactggccagttgggcaacggctgcaactcccagacctacctgtcgctgctc
gaccacccgacctacgccgcgggcgcggtgcgggccatctggcaggaactgggcggcact
attctgggcaaggatcgcgtcggtgtcgtgccggccaacaccaagctgctggccaaggcg
ttctccccggacctggtcgaagtcatccgcgacatcaacaaattcagtaacaacaccatg
gcccagcagctgttcctgagcctgggcgaagaatttcgcaacgaagccgatggtgacgac
ggcaaggccgcgcagcgggtgattcgccagtggctggcgaaaaaaggtattaccgcgccg
catctggtcatggagaacggctcgggtctttcgcgtgcggagcgggtcagcgcccgtgaa
atggcaattatcctgcaggccgcctggcgcagcccgtatgccgccgaattcatgagttcg
atgccgctggcagggcttgacggcaccatgcgcaaacgcctcaagcgtacaccgctgctg
ggcgaggcgcacatcaagaccggcaccctgaacaccgttcgcgcgattgccggtttcagc
cgcgacagcaatggcaacacctgggcagtcgtggcgatcctcaacgatccgcgtccgttc
ggggcgtcttcgattctggatgaggtgctgatcgacctgtaccgccagcccaagctggcc
aacaccacggtctcgatacagcagtaa

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