KEGG   Pseudomonas avellanae: BKM03_22445Help
Entry
BKM03_22445       CDS       T05369                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pavl  Pseudomonas avellanae
Pathway
pavl03030  DNA replication
pavl03410  Base excision repair
pavl03420  Nucleotide excision repair
pavl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pavl00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    BKM03_22445
   03410 Base excision repair
    BKM03_22445
   03420 Nucleotide excision repair
    BKM03_22445
   03430 Mismatch repair
    BKM03_22445
Enzymes [BR:pavl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BKM03_22445
    6.5.1.6  DNA ligase (ATP or NAD+)
     BKM03_22445
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BKM03_22445
DNA replication proteins [BR:pavl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BKM03_22445
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BKM03_22445
DNA repair and recombination proteins [BR:pavl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BKM03_22445
   NER (nucleotide excision repair)
    Other NER factors
     BKM03_22445
   MMR (mismatch exicision repair)
    Other MMR factors
     BKM03_22445
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AVB21655
LinkDB All DBs
Position
4680559..4682274
Genome map
AA seq 571 aa AA seqDB search
MKAFAELYAQLDATTSSNAKLAAMRDYFKHADPQDAAWAVYFLSGGRPRQLVPTRVLREQ
AMTLANLPEWLFEESYQAVGDLAETLSLLLPQADHSNDEGLATWMEDKLLPLRGLPPEEL
AARLPMFWSQLDRSSLMVCIKLITGSFRVGVSKLLVTRALAALADIDSKRVAQRLVGYTD
LSHRPSAERYLKLIAPESEDEHAQRGGQPYPFFLAHSLQQPADQFEALLGPAENWQVEWK
WDGIRAQLVKRDGRLWIWSRGEELVTDRFPELHSLAQCLPDGTVIDGEIVVWKASDINPD
ISPDSTAAFALDNDAPHAAPSVQPFALLQQRIGRKTLGKKILTDIPVVVLAYDLLEWQGA
DWRNRPQHERRTQLETLIDSCQSEVLMPSPVLTGKDWLDLATQREASRSMGVEGMMLKAR
DSLYGVGRTKDMGVWWKWKIDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDGPPQSSER
TLVPFAKAYSGLTDEEMRKVDAIVRKTTVEKFGPVSSVTPTLVFELGFEGIALSKRHKSG
IAVRFPRMLRWRQDKPVAEADSLTTLQDLLN
NT seq 1716 nt NT seq  +upstreamnt  +downstreamnt
atgaaggccttcgccgaactctacgcacagctggacgccaccacctcaagcaatgccaaa
ctggccgcgatgcgtgactatttcaaacacgccgatccgcaggacgccgcttgggcggtg
tacttcctgtccggtggacgccccaggcaactggtgcccacccgcgtgctgcgcgagcaa
gccatgacactggcgaacctgccggaatggctgttcgaagaaagctatcaggccgttggc
gacctggcggaaaccctgtcattgctgctgccgcaggccgaccacagcaacgacgaaggt
ctggctacgtggatggaagacaagctgttgccgttgcgcggcctgccgcccgaagagctg
gccgcccgcttgcccatgttctggtcgcaactggaccgcagcagcttgatggtttgcatc
aagctgatcaccggcagctttcgcgtcggtgtatcgaaattgctggtcacccgcgcactg
gccgcgctggctgacatcgacagcaagcgcgttgcacaacggctggtcggctataccgac
ctgtcgcatcggcccagcgccgagcgctacctcaaactgatcgcgcctgaatcggaagat
gaacacgcgcaacgcggcggtcagccctacccgttctttcttgcgcactccttgcaacag
cctgccgaccagttcgaggcgttgctggggccggccgagaactggcaggtggagtggaaa
tgggacggcatccgcgcacaactggtcaaacgtgacggcaggctgtggatctggtcacgg
ggcgaagagctggtcaccgaccgcttcccggaactgcacagcctggcgcaatgcctgccc
gacggcacagtgatcgacggcgaaatcgtggtctggaaagcgtctgacattaacccggac
atcagccccgacagcaccgcagcgttcgcactggataacgacgccccgcacgctgcgccc
tcagtccagcccttcgccctgctgcaacaacgcatcggccgcaagacactgggcaagaag
atcctcactgacattccggtcgtggtgctggcctatgacctgctggaatggcaaggcgct
gactggcgcaaccggccgcaacacgaacgccgcacacaactggaaaccttgatcgatagc
tgtcagagcgaggtgctgatgccctccccggtgctcaccggcaaagactggctcgacctc
gccactcagcgcgaagcatcccgcagcatgggggtcgagggcatgatgctcaaggcccgc
gactcgctgtacggggtcggtcgcaccaaggacatgggcgtctggtggaaatggaaaatc
gacccgttcagcgtcgatgccgtgctgatctacgcgcaacgcggtcatggtcggcgtgcc
agtctgtacagcgattacacctttgcggtgtgggacggcccgccccagtcaagcgaacgc
acattggtgccgttcgccaaagcctactcagggctgaccgacgaagaaatgcgcaaggtg
gacgccatcgtgcgcaagaccaccgtcgagaagtttggcccggtgagcagtgtgacgccc
accttggtgttcgagctgggtttcgagggcatcgccttatccaagcgtcacaagagcggc
atcgccgtacgcttcccgcgcatgctgcgctggcgacaggacaaaccggtcgccgaggcc
gatagcctgacgaccctgcaggacctgctgaactga

DBGET integrated database retrieval system