Photorhabdus asymbiotica: PAU_01408
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Entry
PAU_01408 CDS
T00941
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pay
Photorhabdus asymbiotica
Pathway
pay03030
DNA replication
pay03410
Base excision repair
pay03420
Nucleotide excision repair
pay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAU_01408 (ligA)
03410 Base excision repair
PAU_01408 (ligA)
03420 Nucleotide excision repair
PAU_01408 (ligA)
03430 Mismatch repair
PAU_01408 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pay03032
]
PAU_01408 (ligA)
03400 DNA repair and recombination proteins [BR:
pay03400
]
PAU_01408 (ligA)
Enzymes [BR:
pay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PAU_01408 (ligA)
DNA replication proteins [BR:
pay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PAU_01408 (ligA)
DNA repair and recombination proteins [BR:
pay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PAU_01408 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PAU_01408 (ligA)
MMR (mismatch excision repair)
DNA ligase
PAU_01408 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PAU_01408 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
RUBY_RBDX
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
CAQ83500
UniProt:
C7BSJ7
LinkDB
All DBs
Position
1594195..1596213
Genome browser
AA seq
672 aa
AA seq
DB search
MKSTAQQIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITSDSPTQ
RVGAAPLAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDTQDLVVCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITSNVRTINAVPLRLIGENIPARIEVRGEVFMPQNG
FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFLCYGVGVLEGGELPASHY
ERLMQFKKWGLPVSDKVRVCTDSNQVIDFYRNIENQRSTLGFDIDGVVIKVNSLELQETL
GFVARAPRWATAFKFPAQEQMTIVRDIEFQVGRTGAITPVARLEPVQVSGVTVSNATLHN
ADEIERLGLRIGDTVIIRRAGDVIPQVVGVVEDRRPQDSDEVIFPEYCPVCGADIEKIEG
EAVARCTGGLVCGAQRKEALRHFVSRRAMDVDGMGEKIIDQLVDKEYVETPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKKTTFARFLYALGIREVGEATAANLAAYFGDLNKLRA
ADEEALKEVQDVGEVVAKHVVHFFNEPHNQKVIDDLIDNIGINWEPIAVTKAEKIDSPFA
GKTIVLTGSLHQLSRDEAKDKLIALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIAV
IDEEEMIRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaactgctcaacaaatagaaaatctcagaaaaacattgcgtcatcatgaatat
ctgtatcatgtcatggatgcgccagagatctctgatgcagaatatgatcggttaatgcag
gaactgaagactcttgaaggacagcatcctgaactgattacatctgattcaccaacccaa
cgagttggtgctgctcctctggctgcttttgaacaagtccgccatgaaattcctatgctg
tcactggataacgtattcgatgaggagagttatttggcgtttgataagcgggtacgtgat
cgcttgaaagatactcaggatttagtcgtttgctgtgagctgaaactggatggtctggct
gttagtttgttgtatgaaaatggtgaactggtgcgagcggcaacccgtggtgatggaaca
acgggagaaaacattacatcgaatgtacgaacgattaacgcggttccgttgcgtctgatt
ggagaaaatattcctgcccgtattgaagtccgtggtgaagtttttatgccacaaaacggg
tttgagaaactgaatgaagaggcccgtcgcactggtgcaaaagtatttgctaacccacgt
aatgcggcggctggctctctacgtcagcttgatcctcgtattaccgctaaacgcccactg
gctttcctctgttatggtgttggtgttttggaagggggagaattaccggccagtcattat
gagcgattaatgcagtttaaaaaatggggattaccggtcagcgataaagttagagtttgt
actgatagcaatcaagttattgatttttacagaaatattgaaaatcagcgctcaacgttg
ggatttgatatcgatggtgttgttattaaagtgaattcgctggaattacaggaaacgcta
ggctttgtcgcccgtgcgccacgttgggcaacggcattcaaatttcctgctcaggaacaa
atgacgattgttcgcgatattgagtttcaagttgggcgtactggtgcaattacaccggta
gcgcgtttagaacctgttcaggtctctggtgtaacggttagtaatgcaacattacataat
gcagatgagattgaacgtttaggtttacgtattggtgatactgttattatccgtcgtgcc
ggtgatgttattccacaggttgtcggtgttgtggaggacagaaggccgcaggacagtgat
gaagtgattttccctgaatattgtccagtatgtggggcagatattgagaagattgaaggg
gaagctgtagcacgttgtaccggtggtttagtctgtggtgctcagcgtaaagaagcgctt
agacactttgtttcccggcgggcgatggatgttgacggtatgggagaaaagattattgat
caactggtggataaagaatatgtcgaaaccccagcagatcttttcaggcttacggcgggt
aaattaactgggcttgatcgtatggggccgaaatctgctcagaatgtggtagatgcattg
gaaaaagcaaagaaaaccacatttgcccgtttcctttatgctttgggtatccgtgaagtt
ggggaagcgaccgcagctaacctggccgcttattttggtgatctgaataaattacgagcc
gctgatgaagaagcgttgaaagaagttcaagatgttggcgaagtagtggcgaaacatgta
gttcacttcttcaatgaacctcataatcaaaaagttattgatgatctgattgataatata
ggaattaactgggaaccgattgccgtgacaaaggctgagaagattgacagcccatttgca
ggtaaaacaattgtgcttactggttcattgcatcagctatccagagatgaagccaaagat
aaacttattgcgcttggggcaaaagttaccggcagtgtttctaagaaaacagatttggtg
atcgcgggtgaagctgcgggttcaaaattagctaaagctaatgagctaaatatcgcagtc
attgatgaagaagaaatgatccgtttattgggtgaataa
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