Photorhabdus asymbiotica: PAU_01691
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Entry
PAU_01691 CDS
T00941
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease i (exonuclease i) (dn deoxyribophosphodiesterase)
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pay
Photorhabdus asymbiotica
Pathway
pay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PAU_01691 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pay03400
]
PAU_01691 (sbcB)
Enzymes [BR:
pay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PAU_01691 (sbcB)
DNA repair and recombination proteins [BR:
pay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PAU_01691 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PAU_01691 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PAU_01691 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
CAQ83783
UniProt:
C7BST9
LinkDB
All DBs
Position
complement(1914555..1915985)
Genome browser
AA seq
476 aa
AA seq
DB search
MKNSNEQPTFYIHDYETFGKHPALDRPAQFAGVRTDMDFNIIEDPLVIYCSPADDYLPQP
EAVMITGITPQVALEKGINEAEFARKIHNVFSVPNCCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHSHAH
DAMSDVYATIAMAKLLKKAQPRMFDYFFQLRNKQKISNLIDIPQMKPLVHVSGMFGAARS
NTSLVAPLAWHPINRNAVIMCDLAGDISPLLELDADALRERLYTRHDELLPDQPPAPVKL
VHINKCPIIAPDNTLRAEDAERLGLDRDHCEKNLAILRNNPQIREKVVELFAQAEPFPES
DNVDAKLYDGFFSDADKTAMNIIRETLPQNLPALDLTFQDPRIKTLLFRYRARNYPSTLT
YDEQQRWLRHRQDVLTQDKLSEYIFIIEQLFIEHQSNEEKCRQLKTLMEYAVKLAG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaacagcaacgaacaacccaccttctacattcatgactacgaaactttcggtaaa
cacccagcattagacagacctgcccagtttgccggtgtccgtactgatatggatttcaat
atcattgaagatccgttagttatttactgttctcctgctgatgactatctccctcagcca
gaagcggtcatgattacaggaattacgcctcaagttgcattagaaaaaggtatcaacgaa
gcggaatttgcccgcaaaattcataatgtattcagtgtgccgaactgttgtatcctcggt
tataacaatattcggtttgatgacgaagttagccggaatattttttaccgcaatttttat
gatccatacgcttatagctggcaaaaaggtaattcccgttgggatttacttgatgtatta
cgtgcctgttatgccctacgtcccgaaggtattatctggccagaaaatgacgatggtctg
cccagttttaaactagaacatctgaccaaagcaaatggtgttgagcattcacatgctcat
gatgctatgtccgatgtttacgccacaattgcaatggcaaaattgcttaaaaaagcacaa
ccgcggatgttcgattatttctttcagttaagaaataaacaaaaaatcagcaatctcatc
gatatcccccaaatgaaaccattagttcatgtttctggtatgtttggcgctgcgcgtagt
aataccagtctggttgctcctcttgcatggcatccgataaaccggaatgccgttattatg
tgcgatctggcaggagacatttcaccattgctggaactggatgcagatgccttacgtgaa
cgcctgtacacccgtcatgatgaattactgccagatcaaccaccagcccctgttaaactg
gtccacattaataagtgcccgataatcgcacctgataataccttacgagcagaagacgct
gaacgtcttgggctggatcgtgatcattgtgaaaaaaatctggctattctacgaaataat
ccacaaatcagagaaaaagttgtcgaactgtttgctcaggccgaacctttccctgaatca
gataatgttgacgctaagctgtatgatggcttctttagtgatgcagataaaacagcgatg
aatattattcgtgaaacactaccgcaaaatttacctgctttagatctgactttccaagat
ccgagaattaagacactgttatttcgctatcgtgccagaaattacccttctactctaact
tatgatgaacaacaacgctggctgcgccatcgtcaggacgtattaacccaagataagctc
agtgaatatatctttattattgagcagctctttattgaacaccaaagcaatgaagaaaaa
tgtcgtcaacttaaaacactgatggaatatgccgtaaaactagctggataa
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