Paenibacillus barcinonensis: HUB98_08635
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Entry
HUB98_08635 CDS
T06922
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03030
DNA replication
pbac03430
Mismatch repair
pbac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUB98_08635 (holA)
03430 Mismatch repair
HUB98_08635 (holA)
03440 Homologous recombination
HUB98_08635 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbac03032
]
HUB98_08635 (holA)
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_08635 (holA)
Enzymes [BR:
pbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HUB98_08635 (holA)
DNA replication proteins [BR:
pbac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HUB98_08635 (holA)
DNA repair and recombination proteins [BR:
pbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HUB98_08635 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
nSTAND1
Sigma70_r4_2
HTH_37
Carot_N
Motif
Other DBs
NCBI-ProteinID:
QKS56399
LinkDB
All DBs
Position
complement(1846224..1847240)
Genome browser
AA seq
338 aa
AA seq
DB search
MDVKSATKAIRSGDPASIYVLYGTEKYQIQQFTEMLKAQVIEEEHQDFAVIPYDLSETPI
EAVVEEAETVPFLVPRKLIIVRDTSLFTAGKESKIEHQVDRLITYMDNPADYSTIVFLAQ
GDKLDERKKLVKAVKKQAVVLAFAPLSGEELVQWIVKLAKQREVTFDAGAADTLISYAGT
ELQTLSAEVDKLCLFAGKGGVIRRADIESLVARSTEQNVFALVEELANLRLEKALALFYE
LLKQREEPIKIAALIARQFRIMIQVKELGQQSYSQQQIASQLGLHPYAVKIAGEQARKFE
ADRLRKILSHLSELDYQMKTGAVDKVLGLELFLLRLGA
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaaaagtgcaacaaaggcaatacgtagtggagacccggcgtcaatctatgtg
ttgtacggaacggagaagtatcagatacagcaatttacggagatgctgaaagcacaagtc
attgaagaggaacatcaggattttgctgtcatcccttatgatctctccgaaacaccgatt
gaagcggttgtggaggaagcagaaacggttccctttctcgttccgcgtaaactgattata
gtcagagacaccagcttgtttactgcgggaaaagaatcgaaaatagagcatcaggtcgat
cgcttgattacatatatggataatccggctgactacagcacgatcgtttttttggcgcag
ggtgacaagctggacgagcgaaaaaaactggtcaaggccgtcaagaaacaggcggtagta
ttggcgtttgcaccgttaagtggggaagaattagtgcagtggatcgttaagcttgcgaag
cagcgggaagttaccttcgatgctggcgcagccgatacgctgattagttatgctggaacc
gagctgcagacgttatccgccgaggtggataagctttgtttgtttgctggcaaggggggc
gtgattcgtcgtgcagatattgagtcacttgtggcgcgaagcaccgagcaaaacgtgttt
gcgttagtggaggagttagcaaatttgaggctggaaaaggcgcttgcactcttctatgag
ctgttgaagcagcgagaggagccgatcaaaattgcagcgctcattgcccgtcagtttcgc
attatgatacaggtgaaggagcttggacagcaaagctactcacagcagcagattgccagt
cagctcgggctgcatccgtatgccgtgaaaattgccggggaacaggcccgcaaattcgaa
gcggatcgtctgcgcaaaatactcagtcacttgagcgagctggattatcagatgaaaacg
ggggctgtagacaaggtgcttggcctggagctgtttttgttaagacttggcgcgtga
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