Paenibacillus barcinonensis: HUB98_14810
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Entry
HUB98_14810 CDS
T06922
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUB98_14810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbac03019
]
HUB98_14810
03009 Ribosome biogenesis [BR:
pbac03009
]
HUB98_14810
Messenger RNA biogenesis [BR:
pbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUB98_14810
Ribosome biogenesis [BR:
pbac03009
]
Prokaryotic type
rRNA helicases
HUB98_14810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QKS57451
LinkDB
All DBs
Position
complement(3243165..3244712)
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AA seq
515 aa
AA seq
DB search
MTNFEQLGIRPEWCEVLKHQGIAVPTPVQERSIPVLLGGRDIIAEAQTGTGKTLAFLLPI
IQKINVSDRSPQALIIAPTRELALQITEEAKKLTANDDKIHVLAVYGGQDVEKQLRKLQN
GTQIVVGTPGRLLDHLRRGTLKLDNVKKLVLDEADQMLHMGFLDDVETILRELPHKRQTM
LFSATMPKGIRVLAKNYMKDPEDVKVSSKSVIPIHQIRQQVLECTDRGKFDALRGMIDTY
RPYLAIIFCRTKRRASKLNEDLRAAGYDSDELHGDLSQAKRENVMKAFRDAKLQVLVATD
VAARGLDVEGVTHVFNYDMPHDAESYIHRIGRTGRAGGTGLAVTFATQHDRPELARIEEG
TNQKLNRIQWTSEGPVASTGATRRSIHSEGDEERGGRSAGTGSARRGSGRNDRRDGGGRG
SRGGAGGRSGGRSGGRSGDERSTSRGSARSSDSSRGTGQGGRGGASRGEERSSGGWAGRS
ADKRTAGRGGAGSGRPDSAGRGPGRGDRRDSRRGR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaattttgaacaactaggcattcgccccgaatggtgcgaggtattgaagcatcag
ggcattgccgtgccgactccggtacaggaacgttcgattccggtactgctgggtggacgt
gatatcattgccgaggcacagacgggcacagggaaaacactggcttttttgctgccgatc
attcagaaaattaacgtatccgaccgctctccgcaggcgctgattattgctccaacgcgt
gagctggctctgcagattacggaagaagcgaagaagctgactgcgaacgatgacaagatt
cacgtgcttgccgtatatggtggacaggatgtggagaagcagctgcgcaagctgcaaaac
ggaactcagatcgttgtaggaacaccgggccgtcttctggatcacctgcgccgtggtacg
ttgaagctggataatgttaaaaaactggtgctggacgaagcggatcagatgcttcacatg
ggctttctggacgatgtggagacgattcttcgtgaattgccacacaaacgtcagacgatg
ctgttctcggcaacgatgcctaagggcattcgcgtgctggcgaaaaactatatgaaagac
ccggaggacgtgaaggtttcctccaagtcagtgattccgatccatcagattcgccagcag
gtgctggaatgtacagaccgcggcaagtttgatgcacttcgtggcatgattgacacgtat
cgcccgtatctggcgattattttctgccggacgaaacgccgggcttcgaagctgaatgag
gatctgcgtgcagcaggctatgacagcgatgagcttcatggtgacttgtcgcaggcgaag
cgagaaaatgtcatgaaggcgttccgtgatgcgaagcttcaggtgcttgtagcaacggat
gtagcagcgcggggactagacgtggagggggttacccacgtatttaactatgacatgccg
catgacgcggaaagttatattcaccgaatcggccgtacgggccgtgcaggaggaacaggt
cttgcggtgacctttgccactcagcatgacagacctgagcttgctcgtatagaggagggc
acgaatcagaagctgaaccgcatccagtggacaagtgagggtccagttgcttctacggga
gctacgcgccgctccattcatagcgagggcgatgaggagcgcggtggtcgctcagccggg
acaggcagtgctcgtcgcggctcaggccggaacgaccgccgagacggtggcggtcgtggt
tcccgcggcggcgcaggaggccgcagcggtgggcgcagtggcggccgtagcggcgatgag
cgcagcacgagccgcggttcggcgcgcagcagcgacagcagtcgcggcacgggccaaggt
ggccgcggtggtgcaagccgcggcgaagagcgtagcagcggcggctgggctggccgcagc
gcagacaagcgcaccgcagggcgtggcggcgctggctctggccgcccggactccgcggga
cgcggtccgggcaggggcgaccgccgcgattctcgtcgcgggcggtaa
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