Pogonomyrmex barbatus (red harvester ant): 105422170
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Entry
105422170 CDS
T04903
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105422170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105422170
03009 Ribosome biogenesis [BR:
pbar03009
]
105422170
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105422170
Spliceosome [BR:
pbar03041
]
Complex A
U2 snRNP components
U2 related factors
105422170
Complex B
105422170
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105422170
Ribosome biogenesis [BR:
pbar03009
]
Eukaryotic type
90S particles
Helicases
105422170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
T2SSE
Flavi_DEAD
AAA_7
ABC_tran
AAA_16
AAA_30
AAA_25
TsaE
Motif
Other DBs
NCBI-GeneID:
105422170
NCBI-ProteinID:
XP_011629757
UniProt:
A0A6I9VT14
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYVKRKATDSSVSNNATTTGSTATKNQVQFNPYTMLPYTPKYYELYKKRI
TLPVFEYRTDFMRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGTKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIPGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEPAPPTKLNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLELTQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaggattgaagtcgtagatccttatgtcaaacggaaagccacggacagc
tctgtatccaacaatgcaacaaccacagggtctacagcgacaaaaaatcaggtgcagttc
aatccatataccatgctgccgtatacaccgaaatactatgaactttataagaaaaggata
actctccctgtattcgaatatcgaactgacttcatgagattgttatctcaacatcaatgc
attgttcttgttggagaaacaggttctggtaaaactacgcaaataccacaatggtgtgtg
gagtattcaagaagtattggaactaaaggagtcgcatgcacacaacctagaagagtagca
gctatgagtgtagctcaaagagtttcggaagaaatggatgttgccttaggtcaagaagta
ggatacagtattcgttttgaagattgtagttcgccgaggacagtgttgaagtacatgacc
gatggtatgttgcttcgagaaggcatgtctgatcccatgctggatgcctatcaagtgata
ttgctagatgaagctcatgaaagaacgttagctaccgatttgctgatgggtgttttgaaa
gaagtgatcaaacagagaccagacttgaaacttgtgattatgagtgctaccttggacgct
ggaaagtttcagcagtattttgacaatgcaccgcttatgaatgtacctggtagaacacat
ccagtcgagatattttatacaccggagccagaaagggattatctagaagcggcgattaga
actgtcattcaaattcagatgtgtgaagaaattcccggggatcttttgctgtttttgact
ggtcaagaggaaattgaagaagcttgcaagagaattaaaagagagatggacaacttggga
cctgaagttggtgaattaaagtgcataccgctatattcgacactgccgccgaatcttcaa
cagagaatatttgaacctgctccgcctactaaacttaacggtgctattggtcgtaaagtt
gtcgtgtcaactaatattgcagagacatcgttgactatcgatggtgttgtctttgtcata
gatcctggttttgctaagcaaaaagtatacaatccaagaattcgtgtcgaatcgctttta
gtatcgcctattagtaaggcttcggcacagcagagagccggtcgcgctggcagaacaaga
cctggaaaatgtttccgattgtacacggaaaaagcatacaaaaacgaaatgcaagacaac
acgtatcctgagattttgcggtccaatcttggaagcgtagtactgcaattgaaaaaactt
ggtattgacgatctggtacattttgactttatggatccacctgcgcctgaaactttaatg
agagctttggaacttctgaattatctggctgctcttgatgatgatggaaatctaacagat
cttggtgcagttatggcggaatttccattagatcctcaattggcaaaaatgcttatagcc
tcctgcaatcataattgtagcaatgagatactcagcattacagctatgctctcagtccca
cagtgctttgtgagaccgaacgaatcaaagaaagccgcggatgatgcaaaaatgaaattt
gcacatattgatggtgatcatttgacactacttaatgtatatcattcttttaaacaacat
atggacgacgttcaatggtgttatgataattatgtgaattatcgatcgttaaagagcgga
gacaatgtaagacagcagctaagtagaataatggatagatttgtattaaagcgaacttcg
acggatttcaattcaaaagactattatattaatatcaggaaagctcttgtcaatggcttt
tttatgcaggtggcgcatttagagagaacgggacattatctgactattaaggataaccaa
gtagtgcaacttcatcccagcagttgcttggatcataaaccagagtgggttatttataat
gaatttgtgctcactactaaaaattatatcagaacagtcactgatattaaacctgattgg
ctgctgatgatagcaccgcaatattatgatctacaaaatttccctcagtgtgaagcaaaa
agacaactcgaacttactcaggcgaaattagattcaaaacagtatcaagaaggcttctaa
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integrated database retrieval system
