KEGG   Pogonomyrmex barbatus (red harvester ant): 105425482Help
Entry
105425482         CDS       T04903                                 

Definition
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
pbar  Pogonomyrmex barbatus (red harvester ant)
Brite
KEGG Orthology (KO) [BR:pbar00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pbar01009]
    105425482
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pbar03019]
    105425482
   04131 Membrane trafficking [BR:pbar04131]
    105425482
   03036 Chromosome and associated proteins [BR:pbar03036]
    105425482
Enzymes [BR:pbar01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     105425482
Protein phosphatases and associated proteins [BR:pbar01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105425482
Messenger RNA biogenesis [BR:pbar03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     105425482
Membrane trafficking [BR:pbar04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    105425482
Chromosome and associated proteins [BR:pbar03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     105425482
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP zf-UBP_var DUF1793 DUF1375
Motif
Other DBs
NCBI-GeneID: 105425482
NCBI-ProteinID: XP_011634578
LinkDB All DBs
Position
Unknown
AA seq 1003 aa AA seqDB search
MTEPIENLDLFIAAKKLADSEIELIRVIENSTKYQKTSTSMFTYGKKKKPGKSKNVRPSA
ALLAAKREAAKQQLLSDKEHNNSFVRDIYQKAIDSYKTIRKETGIVFDHRMAQHKCLWDP
NYPECPARLTRVIQRCEELHLTQRCQYIKPRFATEDELLSKHSQEQIDILKATDGFTDPI
NLESLSSKYDAIFIHPSTYKLSLLAVGSTIKLVENICKGKIQNGMAIIRPPGHHAMKSEY
CGYCFFNNVALAAEKALNSNWANKILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEYGE
FWPNLKESDFHYVGEDFGEGYNFNVPLNKTGMTNADYIAIFQQVLLPMAYEVCRIYLLLS
RAIFLQGGYCLKSLEESVALTLRTLLGDPCPVLQTLDLPSSSIRDTILNVIYAHKPYWKC
YQYQDTYSINSITHNKEEIANRHIVIVTYKGNVIKPDKYETRNCYPTQNKEMLVKVEEKL
DELIHFTKLRETRYKVSIVYDTEMQKHCNIFDDSHPEKPSRISSIYENHEKHGLFGRLHF
LQEDPRVLYISVHRYDNGNFFPNSKFANYTSVGLNAGEGFNVNIPWNKKGMGDAEYIAAF
QQVVMPIAYQFNPELVLVSAGFDACIGDTLGGCLVSPELYGHLTHWLSSLASGRVILSLE
GGYNINSISHAMTMCTKALLGDPLPMLDPNLVPCTSAINSINNVLKTHKKFWPNLQYGMS
LPKERILPKLKTIPSKLEXCMEKYRXTKKTESKIALEGIESEKLELNLTIDKNSLNLVTD
EEISKLTCEVENIKIKNFELQKTMEIEAIETRKNPGLIKSLDVSQNIQKCVNETNQPRGS
QQENSNIREDRDDENATSLQRETRSTTLSEYLSDNLQALTAGEMFAIVPLRDCPHLFMVN
DVPQSGIDVTLPCTECSSTIENWICLQCYTVHCARNVNQHAMQHADENEHPIALSFSDIS
VWCYGCEAYIDNVRLYAARNAVHQSKFNEELPWTYSENNINTS
NT seq 3012 nt NT seq  +upstreamnt  +downstreamnt
atgactgaacctatagaaaatctggatctattcattgctgctaaaaagttagcagacagt
gaaattgaattaataagagtgattgagaattccaccaagtatcaaaaaacttctacaagt
atgttcacatatggaaagaaaaaaaaaccgggaaagtcaaaaaatgttcgtccgtcagct
gcattattagctgctaaacgagaggcagcaaaacaacagttgttatcagacaaggaacac
aataacagttttgtacgcgatatatatcaaaaagcaattgattcatataaaacaatacga
aaggaaactggtattgtgtttgaccaccgcatggctcagcataagtgtctctgggatcca
aactatcctgaatgtccagccagattgacacgagttatacagagatgtgaggaattacat
ctgacgcaaagatgtcaatatataaagccaagatttgctacagaggatgagcttctaagt
aaacatagtcaggaacaaattgatattttgaaggcaacagatggctttacggatcctata
aatttagaatcactatcctccaaatatgatgcaatctttatccatccgtctacatataaa
ttatcattattagctgtaggctcaacaattaagttggtagaaaatatctgtaaaggtaaa
atacaaaatggcatggctattatcagaccacctggtcatcatgcaatgaaatcagaatac
tgtggttactgcttctttaacaatgtagctctagcagcagagaaagctctgaattctaat
tgggcaaataagattttaattgtggattgggatgttcatcatggacaagcaacgcaacaa
atgttttataatgatccacgtgtagtttatttttcaatacatcgttatgaatatggcgaa
ttctggcctaacttaaaagaatctgattttcattatgtcggagaagattttggagaaggc
tataattttaatgtaccattaaataaaactggtatgactaatgcagattatattgcgatc
ttccagcaagttttattgccaatggcttatgaggtatgtcgtatatatttacttctatca
agagcaatattcttacagggtggttattgcttgaaatctttagaagagagtgtagcattg
actttaagaactttgttaggcgatccatgtcctgttttacaaacactcgacttaccatcc
tcaagtatacgtgatactattctgaatgtaatttatgcacacaaaccatattggaagtgt
tatcagtatcaggatacatacagcattaatagcataacgcataataaggaggagattgct
aatcgacatatagttatagtcacatacaaaggcaatgtgattaaaccagacaagtatgaa
actcgaaattgctatcctacacaaaacaaagaaatgttggtgaaagtggaagaaaaattg
gacgaattgatacattttacaaagttgcgtgaaacacgttataaagtatctattgtctac
gatacagaaatgcagaaacattgcaatatttttgacgattctcatccagaaaaaccaagt
cgtatttccagcatttatgaaaatcacgaaaaacatggcttatttggacgattgcatttt
ttacaagaagatccaagagttctttacatttccgttcatcgttacgataatggaaatttt
tttccaaattccaaattcgctaattatacaagcgttggcttaaatgcaggcgagggattc
aacgtgaatataccttggaataagaaaggaatgggagatgctgaatatatagcagctttc
caacaagttgtgatgcctatagcttatcagtttaatccagaactagttttggtttctgct
ggatttgacgcttgtattggtgatacacttggaggttgtcttgtaagtccggaactttat
ggtcatttaactcattggctatcatccttggctagtggtcgtgtcatccttagtcttgaa
ggaggctacaatatcaattctatttcccatgcgatgaccatgtgtacaaaagctctccta
ggtgatcctttgccaatgctggatcctaatcttgttccttgtaccagtgcgattaattcc
attaataatgtattgaagacccataaaaaattctggcccaatctgcaatatggaatgtct
ttaccaaaggaaagaatacttcccaaacttaagacaattcctagtaaactcgaanngtgc
atggaaaaatatagataaaccaaaaaaacagaatcgaaaatcgctttagaaggaattgaa
agtgagaaactggagttaaatctaacaattgataaaaacagcttaaatctagtaacggat
gaagagatttcgaaactaacatgtgaagtggagaatattaaaattaaaaattttgaactt
caaaaaacgatggaaatcgaagcgatcgagacgagaaaaaatcctggattgataaagagt
ttagatgtttcacaaaatatacaaaaatgtgtaaatgaaacgaatcaaccaagaggaagt
cagcaagaaaattctaatatacgcgaggatcgcgacgatgagaatgcaacgtctctacaa
cgtgagacacgatccacaactctttcggaatatctctctgataatcttcaggctctgaca
gcaggagaaatgtttgcaatcgtgcccttacgagattgtccacatttgtttatggtcaat
gatgttccccagagtggaattgatgtaactttaccttgtacggaatgctccagcacgata
gagaattggatctgtttgcaatgttatactgtacactgcgctcgtaatgttaatcagcat
gcaatgcagcatgcagatgagaatgagcatcccatcgcacttagcttcagtgatatctct
gtttggtgttatggttgcgaagcctatatcgataacgttcgattatatgcagcaaggaac
gcagttcatcaaagcaaatttaacgaagaacttccctggacttacagcgaaaataacata
aatacatcttaa

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