Pseudomonas balearica: CL52_09565
Entry
CL52_09565 CDS
T03573
Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbm
Pseudomonas balearica
Pathway
pbm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CL52_09565 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbm03400
]
CL52_09565 (ligD)
Enzymes [BR:
pbm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CL52_09565 (ligD)
DNA repair and recombination proteins [BR:
pbm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CL52_09565 (ligD)
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Other DBs
NCBI-ProteinID:
AJE15281
UniProt:
A0A1G9RU92
LinkDB
Position
2062899..2065436
AA seq
845 aa
MPLEEYNRRRDFAATPEPSGTPRRTGRAKARALQFCVQKHDATRLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYATFEGRIPDGHYGAGEVIVWDRGIWIPQGDAAEA
YRKGKLKFELQGEKLAGVWNLVRTHMQGDKEQWFLIKSNDEQARPQSEYDIVAEQPDSVL
SERTLIPRRRGAAKPAAAPPSKGTGRRKSKAAAPALPEGAVPAELPASFKPQLATLVESV
PEGDWRYEIKFDGYRLLARIEGERVQLFTRNGHDWTAKMPRQAEALAGLGLDSAWLDGEV
VVLGEEGAPDFQALQNAFEAGRSGSILYYLFDAPYLDGHDLRQVPVEERRALLARLLERS
DSELLRFSADFSEQPESILESACQMRLEGLIGKRAGSSYVSRRSNSWVKIKCKNRQEFII
VGYTEPKGARSGFGALLLGLHDDDGKLQYAGKVGTGFNQATLKSLHAKMRPLETERSPLA
KAPPAADVRGAHWLEPQLMCEVAYAEMTRQGVVRHSVFHGLRSDKPAKAITREVARTAPA
RQGTSDALAATRVRISNPERVIDPAIGATKLELARFYAEVAPWALPHLQRRPLALVRAPE
GIDGELFFQKHADKLSIPHITQLDPSLYPEHAPLLVIESAKALVGAAQMGTVELHTWNAK
APALDHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIGLESYLKTSGGKGMHILVPLR
PVHGWAEVKAFSQAVARYLAKLLPQHFSAVSGPKNRIGKIFIDYLRNSQGASTVAAFSVR
AREGLPVSVPIAREELPELRGANAWTVRNLLPRLEELGREDPWEGFWNSEQQISAEMRER
LGMKD
NT seq
2538 nt
+upstream
nt +downstream
nt
atgccactggaagaatacaaccgcaggcgtgacttcgccgcgacccccgagcccagcgga
acgccgcgtcgcaccgggcgtgccaaggcgcgggcgctgcagttctgcgtgcagaagcat
gacgcgacgcgcctgcactacgacttccgcctggaactcgatgggacgctaaagagctgg
gcgattcccaaggggccgagcctggaccccaaggtccggcggctggcggtgcacgtcgaa
gaccatccgctggattacgccaccttcgaggggcgcatcccggacgggcactatggcgcc
ggggaggtgatcgtctgggatcgcggtatctggattccacagggcgacgccgccgaggcc
tatcgcaagggcaagctcaagtttgaactgcagggcgaaaagctcgccggcgtgtggaat
ctggtgcgcacgcacatgcagggcgacaaggagcagtggttcctgatcaagtccaacgac
gagcaggcaaggccgcaaagcgagtacgacatcgtcgccgagcagcctgacagcgtgctc
agcgagcgcacgctgattccccgtcgccgcggtgcggccaagcctgcggcggcgcccccc
agcaaggggacaggccggcgcaagagcaaggcggccgcgccagcgctgccggagggcgcc
gtgcccgccgaactgccggcgagtttcaagccgcagctggcgacgctcgtcgaatccgtg
cccgagggcgactggcgctacgagatcaagttcgacggctaccgcctcttggcgcgtatc
gagggcgagcgggtgcagctgttcacccgtaatggccacgactggacggcgaagatgccg
cggcaggccgaagcgctggccgggctcgggctggattcggcctggctggacggcgaggtg
gtggtgctgggcgaggagggcgcacccgacttccaggcgctgcagaacgcgttcgaggcc
gggcgcagcggcagcatcctctactacctgttcgatgcgccctatctggacggccacgac
ctgcgccaggtgccggtcgaagagcgccgagcgctgctggcccggttgctcgagcgcagc
gacagcgagctgctgcggttttccgccgacttcagcgagcaacccgagagcattctcgag
agcgcctgccaaatgcgtctggaagggttgatcggcaagcgtgcggggagcagctacgtg
tcccgccgcagcaacagctgggtgaagatcaagtgcaagaatcggcaggaattcatcatc
gtcggttataccgaacccaagggcgcgcgcagcggtttcggggcgctgctgctgggtctg
catgacgatgacggcaagctgcagtacgccggcaaggtcggcaccggcttcaatcaggcg
acgctgaaaagcctgcacgccaagatgcggccgctggaaaccgaacgctcgccgctggcc
aaggcgccgccggccgcggatgtgcgcggggcgcactggctcgaaccgcagctgatgtgc
gaagtggcctacgccgagatgacgcgccagggcgtggtgcggcattcggtgttccatggg
ctgcgctcggacaagccggccaaggcgatcacccgtgaggtcgcccgcacggcgcccgcg
cggcagggcaccagcgatgcgctggcagccacgcgcgtgcgcatcagcaacccggagcgg
gtcatcgacccggcgatcggcgcgaccaagctcgaactcgcgcgcttctacgccgaagtg
gcgccctgggccctgccgcacctgcaacggcggccgctggcactggtgcgcgcgccggaa
ggcatcgacggcgagctgttcttccagaagcacgccgacaagctgagcattccgcacatc
acccagctcgatccatcgctgtaccccgagcatgcgccgctgctggtgatcgagagtgcc
aaggcgctggtcggcgccgcgcagatgggcacggtcgaattgcatacctggaatgccaag
gcgccggcgctggaccacccggaccgcttcgtcctcgacctcgacccggacccggcgctg
ccgtggaagcgcatgctcgaagcgacccagctgacccagacgctgctcgacgagattggc
ctggagtcctatctaaagaccagtggcggcaagggcatgcacattctggtgcccttgcgc
ccggtgcatggctgggcggaggtcaaggccttcagccaggccgtggcgcgctacctggcc
aagctgctgccgcagcatttctctgccgtcagcggaccgaagaaccggatcggcaagatc
ttcatcgactacctgcgcaacagccagggtgcgagcacggtcgcagcattttccgttcgc
gcgcgtgaaggcttgccggtgtcggtgcccatcgcgcgcgaggaactgccggaactgcgc
ggggccaacgcctggacggtgcgcaatctactgccgcggctggaagaactggggcgcgaa
gacccctgggaagggttctggaacagcgagcagcagatcagcgccgagatgcgcgagcga
ctcggcatgaaggattaa
DBGET
integrated database retrieval system
