Acidipropionibacterium acidipropionici ATCC 4875: PACID_20080
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Entry
PACID_20080 CDS
T02345
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pbo
Acidipropionibacterium acidipropionici ATCC 4875
Pathway
pbo03420
Nucleotide excision repair
pbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PACID_20080
03430 Mismatch repair
PACID_20080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbo03400
]
PACID_20080
Enzymes [BR:
pbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PACID_20080
DNA repair and recombination proteins [BR:
pbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PACID_20080
MMR (mismatch excision repair)
Other MMR factors
PACID_20080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFV89803
UniProt:
K7RXW7
LinkDB
All DBs
Position
complement(2136955..2140182)
Genome browser
AA seq
1075 aa
AA seq
DB search
MIARPDQVRDLLGIPFSDEQLAVIGAPMEPDVVIAGAGTGKTTVMAARVVWLVASGQVRA
EQVLGLTFTRKATAELADRIDSALRTAGALDEGRAGATVSTYDGFAASLVDEYGAWDGID
PGARLITRARCHQLALEVVRDLVEPPAMAERLAPVSIAGAIVGLSDQMGAHLVGADEVRE
ADRRWRRQLDEAPAKKNGDPYADVVAALRTVDEREELLSLVERYQDLKRDRGLVEYADRM
AQAAHLAAHRPQVGRDLRGRFAVVLLDEYQDTSSAQAALLTDLFSGPDPAGGLGHPVTAV
GDPLQAIYGWRGAAASNILSFARQFPRIGDGGAPEPATTRTLLTNRRSGTRILDCANDIS
APLRASAAVAGRVGALRAPDETREGLVACHGHLTWPRECSWVADTLVEAHERGEIDSWSQ
AAVLVRRNSDVADLHAALAGRQIPVLIANLAGLLQLPDIALVVAHLRIVADRRDDQAWAT
LLAAPRFGLAPGDLAALSGRARDLARRRLAEDTAGGSGEDGQEHPDAHLADAVADPGDLA
GRPGLRAAVARLSAEARVLAEHGVDGPDDLVLRAEQVTGLVDDLAADDPERARSRQGHLD
ALWAEIHGALAEDPDLTLAGVLAWLAAEEEFGDGLARSAPTTQDAVVISTVHGAKGLEWP
LVLLPDLDAGVFPSAMAPDNHITRAAVLPSAVRGDAGTVPQPRSGSRADMAAYKKDLAEE
SRGAEDRLGYVAATRARDRLIVSWHRWRPSATRPRTPGAYAAVVADRLRGWGQTVPEPPA
DDDPPAEIAAGLTGAPWPLHADPELADRIADLAARTAQARSAPGAGEGLPDDPAEAALVA
RWREDADVLLTAHRRGARHGGSGLPRGLTTSQVVALHADRRRFMDQLRRPMPRPVMRGAD
IGTRFHEWVAGRLRPGGQGRLDLLDEEPVAASSAPDPVLERLKEAFLASRWADATVLAVE
EPFALTVGATVIRGRLDAVLADPDDPDIQVVVDWKTSAPNTADPVQLSVYRLAWAGSTGV
PLERVRAAFHHVGANRTVEARPLLTSAQLAEVLAPAGLSVDAAGPASGEYLSSEG
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcccgaccggaccaggtgcgcgacctgctgggtatccccttctccgacgagcag
ctcgccgtcatcggggcaccgatggagcccgacgtggtgatcgccggggcggggacgggc
aagaccaccgtgatggcggcccgcgtggtgtggctcgtcgcctccggtcaggtccgcgcc
gagcaggtgctcggtctcaccttcacccgcaaggccaccgccgaactggccgaccgcatc
gactcggcgctgcgcaccgccggcgccctggacgagggccgggccggagccacggtttcc
acctatgacggcttcgccgcctccctggtcgacgagtacggcgcctgggacgggatcgac
ccgggggccagactcatcacccgcgcccggtgccaccagctcgcactcgaggtggtgcgc
gacctcgtcgagccgcccgcgatggccgagcgcctcgccccggtgtccatcgccggggcg
atcgtggggctgtccgaccagatgggcgcccacctggtcggcgccgatgaggtccgcgag
gccgatcgacgatggcgtcggcagctggacgaggccccggcgaagaagaacggcgacccc
tacgccgacgtggtggcggccctgcgaaccgtcgacgagagggaggaactgctgagcctg
gtcgagcgctaccaggacctcaagagggaccgcggactggtcgagtacgccgaccggatg
gcccaggccgcccatctggccgcccaccggccccaggtgggccgggacctgcgcggccgc
ttcgcggtggtgctgctcgacgagtaccaggacacctcctcggcccaggccgcgctgctc
accgacctgttctccggccccgacccggcaggaggactcggccatcccgtcacggcggtc
ggcgatcccctccaggcgatctacggctggcgcggggcggcggccagcaacatcctcagc
ttcgcccggcagttcccccgcatcggcgatggcggggcgcccgagcccgccaccacccgc
accctgctcaccaatcgccgctccggaacccgcatcctcgactgcgcgaacgacatctcg
gccccgctgcgggcctcggccgcggtggccgggagggtcggtgcgctgcgggcccccgat
gagacgcgcgagggcctggtcgcctgtcacgggcacctcacctggccgcgggaatgctcc
tgggtggccgacaccctcgtggaggcccacgagcggggcgagatcgactcgtggtcccag
gcggccgtgctggtccgccgcaactccgacgtcgccgatctgcacgccgccctggcgggg
cgacagatcccggtgctcatcgccaacctcgccggacttctccagctgccagacatcgcc
ctggtggtggcccacctcaggatcgtggcggaccgccgcgacgaccaggcctgggccacc
ctgctcgccgcaccacgcttcggcctggcccccggcgatctggccgcgctgagcgggcgg
gcccgcgatctggcccgcagacggctggccgaggacaccgcgggcgggtccggggaggac
ggtcaggagcatcccgacgcccacctggccgacgccgtcgcggaccccggtgacctggcc
gggcggcccgggctgcgcgccgcggtggccaggctctcggccgaggcccgcgtcctggcc
gagcacggggtcgacgggcccgacgacctggtgctcagagccgagcaggtcaccggactg
gtcgacgacctggcggccgacgatcccgagcgggccaggagcaggcaggggcacctggat
gcgctctgggcggagatccacggggcgctggccgaggacccggacctcaccctcgccggg
gtgctggcctggctggcggcggaggaggagttcggcgacgggctggcgcgcagcgccccc
accacccaggacgcggtggtcatcagcaccgtccacggggccaagggcctggaatggccg
ctcgtgctcctgccggacctcgacgccggggtgttcccctcggcgatggcccccgacaac
cacatcacccgggccgccgtgctgccttcggcggtccgcggtgacgccggcaccgtcccg
cagccgcgctccggctcccgggccgacatggcggcctacaagaaggatctggccgaggag
tcccgcggggccgaggacaggctgggctacgtcgccgccaccagggcccgggaccggctc
atcgtctcctggcaccgctggaggccctcggcgaccagacccaggacaccgggggcctac
gccgcagtggtcgccgaccggctgcgcgggtggggacagacggtccccgagccgcccgcc
gacgacgaccctcccgccgagatcgcagccggcctcaccggggcgccgtggcccctgcac
gccgacccggagctggccgaccggatcgccgacctggccgcgcggaccgcccaggcccgc
tcggcacccggcgccggagaggggctgcccgacgatcccgccgaggccgccctcgtggcg
cgatggcgcgaggatgccgacgtcctgctgaccgcgcaccggcggggcgcccggcacggc
ggatccggcctgccccgcgggctcaccacatcgcaggtggtggccctccacgcggaccgg
cgcagattcatggaccagctgcgccggccgatgccccgcccggtgatgcggggcgccgac
atcggcacccggttccacgaatgggtggccggacggctgcgtcccggcggacagggccgt
ctcgacctcctcgacgaggagccggtcgccgcctcctcggccccggacccggtgctggag
cgcctcaaggaggccttcctggccagtcggtgggcggacgcgacggtgctggcggtcgag
gagcccttcgccctcaccgtcggcgcgaccgtgatccgcgggaggctggacgccgttctc
gccgacccggacgacccggacatccaggtcgtcgtggactggaagacgtcggccccgaac
accgccgaccccgtgcagctgtcggtgtaccggctcgcctgggccggatcgacgggggtg
ccgctggaacgggtgcgcgccgcattccaccatgtgggggcgaaccggaccgtcgaggcc
cgtcccctcctgacgtcggcccagctggccgaggtgctggccccggccggcctgtcggtg
gacgccgcgggcccggcctcaggggagtacctaagctcggaggggtga
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