KEGG   Acidipropionibacterium acidipropionici ATCC 4875: PACID_20080
Entry
PACID_20080       CDS       T02345                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
pbo  Acidipropionibacterium acidipropionici ATCC 4875
Pathway
pbo03420  Nucleotide excision repair
pbo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PACID_20080
   03430 Mismatch repair
    PACID_20080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pbo03400]
    PACID_20080
Enzymes [BR:pbo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PACID_20080
DNA repair and recombination proteins [BR:pbo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PACID_20080
   MMR (mismatch excision repair)
    Other MMR factors
     PACID_20080
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PDDEXK_1 AAA_30
Other DBs
NCBI-ProteinID: AFV89803
UniProt: K7RXW7
LinkDB
Position
complement(2136955..2140182)
AA seq 1075 aa
MIARPDQVRDLLGIPFSDEQLAVIGAPMEPDVVIAGAGTGKTTVMAARVVWLVASGQVRA
EQVLGLTFTRKATAELADRIDSALRTAGALDEGRAGATVSTYDGFAASLVDEYGAWDGID
PGARLITRARCHQLALEVVRDLVEPPAMAERLAPVSIAGAIVGLSDQMGAHLVGADEVRE
ADRRWRRQLDEAPAKKNGDPYADVVAALRTVDEREELLSLVERYQDLKRDRGLVEYADRM
AQAAHLAAHRPQVGRDLRGRFAVVLLDEYQDTSSAQAALLTDLFSGPDPAGGLGHPVTAV
GDPLQAIYGWRGAAASNILSFARQFPRIGDGGAPEPATTRTLLTNRRSGTRILDCANDIS
APLRASAAVAGRVGALRAPDETREGLVACHGHLTWPRECSWVADTLVEAHERGEIDSWSQ
AAVLVRRNSDVADLHAALAGRQIPVLIANLAGLLQLPDIALVVAHLRIVADRRDDQAWAT
LLAAPRFGLAPGDLAALSGRARDLARRRLAEDTAGGSGEDGQEHPDAHLADAVADPGDLA
GRPGLRAAVARLSAEARVLAEHGVDGPDDLVLRAEQVTGLVDDLAADDPERARSRQGHLD
ALWAEIHGALAEDPDLTLAGVLAWLAAEEEFGDGLARSAPTTQDAVVISTVHGAKGLEWP
LVLLPDLDAGVFPSAMAPDNHITRAAVLPSAVRGDAGTVPQPRSGSRADMAAYKKDLAEE
SRGAEDRLGYVAATRARDRLIVSWHRWRPSATRPRTPGAYAAVVADRLRGWGQTVPEPPA
DDDPPAEIAAGLTGAPWPLHADPELADRIADLAARTAQARSAPGAGEGLPDDPAEAALVA
RWREDADVLLTAHRRGARHGGSGLPRGLTTSQVVALHADRRRFMDQLRRPMPRPVMRGAD
IGTRFHEWVAGRLRPGGQGRLDLLDEEPVAASSAPDPVLERLKEAFLASRWADATVLAVE
EPFALTVGATVIRGRLDAVLADPDDPDIQVVVDWKTSAPNTADPVQLSVYRLAWAGSTGV
PLERVRAAFHHVGANRTVEARPLLTSAQLAEVLAPAGLSVDAAGPASGEYLSSEG
NT seq 3228 nt   +upstreamnt  +downstreamnt
atgatcgcccgaccggaccaggtgcgcgacctgctgggtatccccttctccgacgagcag
ctcgccgtcatcggggcaccgatggagcccgacgtggtgatcgccggggcggggacgggc
aagaccaccgtgatggcggcccgcgtggtgtggctcgtcgcctccggtcaggtccgcgcc
gagcaggtgctcggtctcaccttcacccgcaaggccaccgccgaactggccgaccgcatc
gactcggcgctgcgcaccgccggcgccctggacgagggccgggccggagccacggtttcc
acctatgacggcttcgccgcctccctggtcgacgagtacggcgcctgggacgggatcgac
ccgggggccagactcatcacccgcgcccggtgccaccagctcgcactcgaggtggtgcgc
gacctcgtcgagccgcccgcgatggccgagcgcctcgccccggtgtccatcgccggggcg
atcgtggggctgtccgaccagatgggcgcccacctggtcggcgccgatgaggtccgcgag
gccgatcgacgatggcgtcggcagctggacgaggccccggcgaagaagaacggcgacccc
tacgccgacgtggtggcggccctgcgaaccgtcgacgagagggaggaactgctgagcctg
gtcgagcgctaccaggacctcaagagggaccgcggactggtcgagtacgccgaccggatg
gcccaggccgcccatctggccgcccaccggccccaggtgggccgggacctgcgcggccgc
ttcgcggtggtgctgctcgacgagtaccaggacacctcctcggcccaggccgcgctgctc
accgacctgttctccggccccgacccggcaggaggactcggccatcccgtcacggcggtc
ggcgatcccctccaggcgatctacggctggcgcggggcggcggccagcaacatcctcagc
ttcgcccggcagttcccccgcatcggcgatggcggggcgcccgagcccgccaccacccgc
accctgctcaccaatcgccgctccggaacccgcatcctcgactgcgcgaacgacatctcg
gccccgctgcgggcctcggccgcggtggccgggagggtcggtgcgctgcgggcccccgat
gagacgcgcgagggcctggtcgcctgtcacgggcacctcacctggccgcgggaatgctcc
tgggtggccgacaccctcgtggaggcccacgagcggggcgagatcgactcgtggtcccag
gcggccgtgctggtccgccgcaactccgacgtcgccgatctgcacgccgccctggcgggg
cgacagatcccggtgctcatcgccaacctcgccggacttctccagctgccagacatcgcc
ctggtggtggcccacctcaggatcgtggcggaccgccgcgacgaccaggcctgggccacc
ctgctcgccgcaccacgcttcggcctggcccccggcgatctggccgcgctgagcgggcgg
gcccgcgatctggcccgcagacggctggccgaggacaccgcgggcgggtccggggaggac
ggtcaggagcatcccgacgcccacctggccgacgccgtcgcggaccccggtgacctggcc
gggcggcccgggctgcgcgccgcggtggccaggctctcggccgaggcccgcgtcctggcc
gagcacggggtcgacgggcccgacgacctggtgctcagagccgagcaggtcaccggactg
gtcgacgacctggcggccgacgatcccgagcgggccaggagcaggcaggggcacctggat
gcgctctgggcggagatccacggggcgctggccgaggacccggacctcaccctcgccggg
gtgctggcctggctggcggcggaggaggagttcggcgacgggctggcgcgcagcgccccc
accacccaggacgcggtggtcatcagcaccgtccacggggccaagggcctggaatggccg
ctcgtgctcctgccggacctcgacgccggggtgttcccctcggcgatggcccccgacaac
cacatcacccgggccgccgtgctgccttcggcggtccgcggtgacgccggcaccgtcccg
cagccgcgctccggctcccgggccgacatggcggcctacaagaaggatctggccgaggag
tcccgcggggccgaggacaggctgggctacgtcgccgccaccagggcccgggaccggctc
atcgtctcctggcaccgctggaggccctcggcgaccagacccaggacaccgggggcctac
gccgcagtggtcgccgaccggctgcgcgggtggggacagacggtccccgagccgcccgcc
gacgacgaccctcccgccgagatcgcagccggcctcaccggggcgccgtggcccctgcac
gccgacccggagctggccgaccggatcgccgacctggccgcgcggaccgcccaggcccgc
tcggcacccggcgccggagaggggctgcccgacgatcccgccgaggccgccctcgtggcg
cgatggcgcgaggatgccgacgtcctgctgaccgcgcaccggcggggcgcccggcacggc
ggatccggcctgccccgcgggctcaccacatcgcaggtggtggccctccacgcggaccgg
cgcagattcatggaccagctgcgccggccgatgccccgcccggtgatgcggggcgccgac
atcggcacccggttccacgaatgggtggccggacggctgcgtcccggcggacagggccgt
ctcgacctcctcgacgaggagccggtcgccgcctcctcggccccggacccggtgctggag
cgcctcaaggaggccttcctggccagtcggtgggcggacgcgacggtgctggcggtcgag
gagcccttcgccctcaccgtcggcgcgaccgtgatccgcgggaggctggacgccgttctc
gccgacccggacgacccggacatccaggtcgtcgtggactggaagacgtcggccccgaac
accgccgaccccgtgcagctgtcggtgtaccggctcgcctgggccggatcgacgggggtg
ccgctggaacgggtgcgcgccgcattccaccatgtgggggcgaaccggaccgtcgaggcc
cgtcccctcctgacgtcggcccagctggccgaggtgctggccccggccggcctgtcggtg
gacgccgcgggcccggcctcaggggagtacctaagctcggaggggtga

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