Paludisphaera borealis: BSF38_00435
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Entry
BSF38_00435 CDS
T04622
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbor
Paludisphaera borealis
Pathway
pbor03030
DNA replication
pbor03410
Base excision repair
pbor03420
Nucleotide excision repair
pbor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSF38_00435 (ligA)
03410 Base excision repair
BSF38_00435 (ligA)
03420 Nucleotide excision repair
BSF38_00435 (ligA)
03430 Mismatch repair
BSF38_00435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbor03032
]
BSF38_00435 (ligA)
03400 DNA repair and recombination proteins [BR:
pbor03400
]
BSF38_00435 (ligA)
Enzymes [BR:
pbor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BSF38_00435 (ligA)
DNA replication proteins [BR:
pbor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BSF38_00435 (ligA)
DNA repair and recombination proteins [BR:
pbor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BSF38_00435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSF38_00435 (ligA)
MMR (mismatch excision repair)
DNA ligase
BSF38_00435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSF38_00435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
zf-ribbon_3
zf-NADH-PPase
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
APW59022
UniProt:
A0A1U7CJB3
LinkDB
All DBs
Position
565135..567156
Genome browser
AA seq
673 aa
AA seq
DB search
MASKDLSKEIENLRAEIERHNRLYYLEAAPEISDREFDRLMARLTEIEAEHPELVTPDSP
TQRVGGSPLAQFETVAHTVPMLSIDNTYSYDEIREWDARVRRGLNADEVVKYVVELKVDG
VAVSVRYEHGKFVQGATRGDGERGDDVTANLRTVREIPLALKGDAPDLLEVRGEVFMTNA
ELARINALRKEAGEKPFENPRNSTAGSLKLLDPKICGQRRLRFVSHGLGEYQGIDDPSYF
DLVKKVKALGIPVSSHMKRYDAIDQVIEHAQEWETKRNTLDFQTDGLVIKVDDLNQRRRL
GARTKSPRWSIAFKYEAEQAITKIVAITVQVGKTGKLTPVAELVPVRLAGTTVKRATLHN
ADEIARKDVRVGDAVVVQKAGEIIPQVVRVEKDARTGDEVPYYFPEHCPNCGAPVVRDPG
EVDYRCSNPPSACTEQLKGRLRQYAHRDSLDIDGLGEKLVEQLVSSGLVRSFVDLYRLDA
PTLADLERMGEKSAENLIAGIERSKSRTLDRFLTGLAIRHVGVRTAELLAARFPTLADVR
NATLADLEAIPGLGQVVAASVHEFFQDPDHHQLLDQLGAVGVDPQPYQPPTANSADLPFA
GKTFVLTGTLPKRTRPEAEVLIKSLGGKVTGSVSKSTTYVLAGADAGKKLDNARKLGVTI
LDEPEFERLAGAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaaggatctgagcaaagagatcgagaacctccgcgccgagatcgagcggcac
aaccggctttactatctcgaagccgcccccgagatcagcgaccgcgagttcgaccgactg
atggctcggctgaccgagatcgaggccgaacaccccgagctggtcacgcccgacagcccc
acccagcgcgtcggcggctcgccgctcgcccagttcgagaccgtggcgcacaccgtgccc
atgctctcgatcgacaacacctacagctacgacgagatccgcgagtgggacgcccgcgtt
cgtcgcgggttgaacgccgacgaggtcgtgaagtacgtcgtcgagttgaaggtcgacggc
gtcgcggtctcggtccgctacgagcacggcaagttcgtccagggcgcgacccggggcgac
ggtgagcgcggcgacgacgtcaccgccaacctccgtactgtccgcgagatccccctggcc
ttgaaaggcgacgcgcccgacctgctcgaagtccgcggcgaggtcttcatgaccaatgcc
gagctggcccgcatcaacgcgctgcgcaaggaggccggggagaagccgttcgagaacccg
aggaactccacggccggctcgctcaagctgctcgacccgaagatctgcggccagcgccgg
ctccggttcgtgtcgcacggcctcggcgagtatcaaggcatcgacgacccctcgtatttc
gatctcgtcaagaaggtcaaggcgctgggaatccccgtcagctcccacatgaagcggtac
gacgcgatcgaccaggtcatcgagcacgcccaggaatgggagacgaagcggaacacgctc
gacttccagaccgacggcctggtgatcaaggtcgacgacctcaaccagcggcggcggctg
ggggcgcggaccaagagcccgaggtggtcgatcgccttcaagtacgaggccgagcaggcg
atcacgaagattgtggcgatcaccgtgcaggtcggcaagaccggcaagctgacgcccgtc
gccgagctggtcccggtccggctcgccggcacgacggtcaagcgggcgacgctccacaac
gccgacgagatcgcccgcaaggacgtccgggtcggcgacgccgtggtcgtccagaaggcc
ggcgagatcatcccccaggtcgtccgcgtcgagaaggacgcccgcaccggcgacgaggtc
ccgtactacttccccgagcactgcccgaactgcggcgcgccggtcgtccgcgaccccggc
gaggtcgactaccgttgctcgaaccccccttccgcttgcaccgagcagctcaaggggagg
cttcgccagtacgcgcaccgcgactcgctcgacatcgacggcctgggcgaaaagctcgtc
gagcagctcgtgtcgtcggggctcgttcgctctttcgtcgacctgtaccggctcgacgcg
ccgacgctggcggacctcgaacgcatgggcgagaagtcggccgagaacctgatcgcgggg
atcgagcggagcaagagccggacgctcgaccgcttcctcaccgggctggcgatccgccac
gtcggcgtgcggacggccgaactgctggcggcccgcttcccgacgctcgccgacgtccgc
aacgcgacgctcgccgacctggaggcgatccccgggctcggccaggtcgtcgcggccagc
gtccacgagttcttccaggaccctgaccatcatcagcttctcgaccagcttggcgctgtg
ggcgtcgacccccagccgtaccagccgccgaccgcgaactccgccgatttgccgttcgcc
ggcaagacgttcgtgctgaccggaaccctccccaaacgcacccggccggaagccgaggtc
ttgatcaagagcctcggcggcaaggtcaccggctcggtctccaagtcgacgacctacgtc
ctcgccggcgccgacgcggggaagaagctcgacaacgcccggaagctcggcgtcacgatc
ctcgacgaacccgaattcgagcgcctcgccggcgcgtcgtga
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