KEGG   Parvularcula bermudensis: PB2503_01927Help
Entry
PB2503_01927      CDS       T01298                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pbr  Parvularcula bermudensis
Pathway
pbr03030  DNA replication
pbr03410  Base excision repair
pbr03420  Nucleotide excision repair
pbr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pbr00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    PB2503_01927
   03410 Base excision repair
    PB2503_01927
   03420 Nucleotide excision repair
    PB2503_01927
   03430 Mismatch repair
    PB2503_01927
Enzymes [BR:pbr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PB2503_01927
    6.5.1.6  DNA ligase (ATP or NAD+)
     PB2503_01927
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PB2503_01927
DNA replication proteins [BR:pbr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PB2503_01927
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PB2503_01927
DNA repair and recombination proteins [BR:pbr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PB2503_01927
   NER (nucleotide excision repair)
    Other NER factors
     PB2503_01927
   MMR (mismatch exicision repair)
    Other MMR factors
     PB2503_01927
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID: ADM08464
UniProt: E0TBX1
LinkDB All DBs
Position
304872..306485
Genome map
AA seq 537 aa AA seqDB search
MNRFAALLESLIYTPSRNGKIRLLTEYFASTPDPDRGWAVAAMTRDLDIKSVKPAMIKTL
VEERVDPVLFGLSYDYVGDLAETVSLIWPGQEQRNYIPTLTDIVETLGEISRQEAPSVVA
DWFDALSPPARWALIKLITGGLRIGVAARLVKLALAEFGGQPVQDIEELWHGLEAPYRDL
FAWLEGRSPRPAQAAKAPFRPVMLAHPVEEKDQPKIDLTEMMAEWKWDGIRVQTVVEDGV
KRLYTRTGDDISGTFPDLLASLNEEVAIDGELLIFDPAITDRFVVRPFNDLQQRLNRKVV
SKKLLEESPAFIRAYDLLWARGEDLRPLPFSARRAHLEEISQQGAFPRLDLSPVIPLSSW
EALADLRANPPEDAIEGVMLKRADAPYVPGRPKGQWWKWKREPFLVDAVLMYAQRGHGKR
SSFYSDYTFGVWRTGKDGEELVPVGKAYHGFTDLELKKIDKFVRDHTIDRFGPVRAVRAT
REEGLVFEVAFEGLQRSSRHKSGIAMRFPRINRLRWDKPTAEADRLETLEAMLPATA
NT seq 1614 nt NT seq  +upstreamnt  +downstreamnt
gtgaatcgctttgccgccctgcttgagagtttgatttatacgccgtcgcggaacggcaaa
atccgtcttttgacggaatatttcgcatcgacccccgatcccgatcggggctgggcggtg
gcggccatgacccgcgacctcgatatcaaatcggtgaagccggccatgatcaaaaccttg
gtcgaggagcgggtggacccggtcctgttcggtctctcctacgattatgtcggtgatctg
gcggagaccgtgtcgctgatctggcccgggcaggaacagcgaaactacatccccaccctg
accgatattgttgagaccctgggcgagatttcccgtcaagaggccccaagcgttgttgcc
gactggttcgatgccctctcgccgccggcacgctgggcactgatcaaattgattaccggc
ggactgcgaatcggcgtggccgcacggctcgtcaagttggccctggctgagttcggcggc
caaccggtgcaggacatagaggagctgtggcacgggcttgaggccccctatagggacctt
ttcgcctggcttgaggggcgcagcccccgtcccgcccaggccgcaaaggcaccgttcagg
ccggtgatgttggcccatccggtggaagagaaagaccagccgaaaatcgacctcacagag
atgatggccgaatggaaatgggacggcatccgggtgcagacggtcgtggaggacggggtc
aagcggctatatacccggacgggggacgatatttcggggacctttcccgacctcctggcc
agcctcaacgaggaggtcgccatcgacggtgagctcctgatcttcgaccctgctataacc
gaccggtttgtggtcagaccgttcaacgacctccagcaacgcctcaaccgaaaggtcgtc
tccaagaagctattggaggagagccccgccttcatccgcgcctatgacctcctatgggcg
agaggggaggatctccgtcccctgccctttagcgcgcggcgcgcccatctcgaagagatc
agtcagcagggggcgttcccgcggctggatttgtcgccggtgattccgctgagcagctgg
gaggcccttgccgatttgcgcgcaaacccgccggaggacgccattgagggcgtgatgtta
aaacgcgccgatgccccctatgtccccggccggccgaaagggcagtggtggaaatggaag
cgcgagcccttcctcgtcgacgcggtcctgatgtacgcgcaaagggggcacggcaagcgc
tcgagcttttattccgactataccttcggtgtatggcggacggggaaggacggcgaagaa
ttggtcccggtggggaaagcctatcacggctttacggacctggaactcaagaagatcgac
aaattcgttcgggatcatacgattgaccgtttcgggccggttcgggcggtgcgggccaca
cgggaggaagggctcgtcttcgaagtggcctttgaggggctacagcggtcaagccgccac
aaatcggggatcgccatgcgttttccccgcatcaatcggctgcgctgggacaaacccacc
gccgaggcagatcggctggaaacactggaggcgatgcttcccgcgacggcctga

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