Pectobacterium brasiliense: B5S52_16965
Help
Entry
B5S52_16965 CDS
T06364
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B5S52_16965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbra03400
]
B5S52_16965
Enzymes [BR:
pbra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B5S52_16965
DNA repair and recombination proteins [BR:
pbra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B5S52_16965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ARA77484
LinkDB
All DBs
Position
complement(3797637..3801218)
Genome browser
AA seq
1193 aa
AA seq
DB search
MKNAAPQSLDVMTLPLLGERLIEASAGTGKTYTLAALYLRLLLGLGKQAAYPRPLLVEEI
LVVTFTEAATEELRERIRARIHALRIACLRKSAQGEEAEKPKDTSLAQLLAEISDHRDAA
DVLLAAERQMDEAAIYTIHGFCQRMLSTNAFESGVLFEQVLIEDEQPLRRQACADFWRRY
CYPLPVEVARIVGLEWKGPENLLADLAPYLHGEAPAFRLPPEEDETLLSRHEKIVATIDA
YKQRWLALAADLEALISASGVDKRSYSSKHLPNWLQKVTLWAEQPTLDYQLPKDLVRFAQ
QTLIEKTKKGEPPVHALFDETERLLEAPLSLRDLVIVRALSAIRESVSEEKRQRAELGFD
DLLSRLDVALQQPGGEQLASAIRERYPVAMIDEFQDTDPQQYRIFRTLYVGQPQCGLLLI
GDPKQAIYAFRGADIFTYMHARGEVAAHYTLGTNWRSSHQMVHGVNRLFERLDSPFIFQN
IPFLPVKPAESKRGLVFEVEGQPQPALQFWLTGSEPIGVGDYQQRMARQCAAQIRDWLAA
SQRNEAWLVTDDSRRLVRASDMSVLVRSRREASLIRDALSRLSIPSVYLSNRDSVFSTPE
ASDMLWLLQAVLAPEQERTLRSAMATALMGLDAEQVDALGQSEAAWDALVDEFAGYRTLW
RQRGVLPMLRALMSQHQLAENLLASAEGERRITDILHIGELLQDASATLDSEHALVRWLS
QQIVQPNPQAENQQLRLESDRHLVQIVTIHKSKGLEYPLVWLPFISNFRVQDQGIYHDRE
SYQAVLDLQNNEESQTLAEEERLAEDLRLLYVALTRSIYHCSVGVAPVQRSRKKDGSSDM
HQSALGYLLQRGKEAEAATLVSELEGMVGDGVALTPLQATEEQRWQPDRPELADLRARHI
ERQLRDGWRVTSYSGLQQQGSASAQDLVPRLDIEAIGERQEADETQLTPHTFPRGASPGT
FLHSLFETLDFTQPVEDDWLAEQLQLQGFEAHWHPVLKAWMDTLLHTPLNEQGIALSALE
NADKQAELQFYIPIDAPIQAAQLDRLAKHHDPLSARCPALSFQQVKGMLKGFIDLVFRWK
GRYYLLDYKSNWLGPDASAYTQTAMMQSMVEHRYDLQYQLYTLALHRYLRHRIADYDYER
HFGGVFYLFLRGVQASHPGNGIFACRPSAEFVFGLDALFKGKTPDDADTGIPS
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatgccgcgccgcaatcattagacgttatgacgttgccgctcctcggggagcgg
ctgattgaggcgtcggccggaacggggaaaacctatacgctggctgcgctttacctgcgt
ctgctattggggctggggaagcaagccgcgtatccacgtccactactggtcgaggaaatt
ctggttgtgacctttacggaggctgcgaccgaagagctgcgggagcgtattcgtgccaga
attcacgcgttgcgcatcgcctgcctgcgtaaaagcgcgcagggtgaagaggcagagaag
cctaaagatacgtcgctagcgcagctgctggcggagatttcggatcaccgcgatgcggcc
gacgtattgctggcggccgaacgacaaatggacgaagcggcgatctacacgatccacggc
ttctgccagcgtatgctcagtaccaatgcgtttgaatccggcgtgcttttcgaacaggtg
ctgatagaagatgaacagccgctgcgccgtcaggcctgcgctgatttctggcgtcgttac
tgctatccgctgccagtcgaagtcgcacgcattgtcggtctggagtggaaagggccggaa
aacctgttggccgatttggcgccttatctgcacggtgaagcgcctgcgtttcgcttgccg
ccagaagaagacgaaacgctgctgagtcgacatgagaagatcgtggcgacgatcgatgca
tacaagcaacgctggctggcgttagccgcggatctggaagcgctgattagtgcttctggc
gtcgataaacgcagctacagcagtaagcatcttcccaactggctacagaaagtcacgctg
tgggcagagcagccgacgctggattaccaactgccgaaagatctggtgagattcgcccag
caaacgctaattgagaaaacgaagaaaggcgaaccgcctgttcatgctctctttgatgag
accgaacggctgcttgaagcgccgctgtcgctgcgcgatttagtcattgttcgcgcgctg
tcggcgatccgcgagtcggtgagtgaggaaaaacgacagcgagcagaactggggtttgac
gatctgctgagccgtttggatgttgcgttgcaacagcctggcggggaacagcttgccagc
gccattcgcgaacgctatccggtggcgatgatcgatgaatttcaggataccgatcctcaa
cagtaccgtattttccgaacgctatacgtggggcagccgcagtgtgggctattgctgatc
ggtgaccctaagcaggctatttatgcgtttcgcggtgcggatatttttacctacatgcac
gcacgcggagaagtcgccgcgcattatacgttgggtacgaactggcgctcgtcgcaccag
atggtacatggtgttaatcgtctgtttgaacgcctcgactctccttttatttttcaaaac
attcctttcctgcctgtcaagcctgctgagtccaagcgcggtttggtgtttgaggtcgag
gggcagcctcagcctgcgctgcaattctggctaacgggttcggaaccgattggtgtagga
gattatcaacagcggatggcgcgtcaatgtgcggcgcagattcgtgactggctggcggcc
agtcagcgcaatgaagcctggctggttactgatgactcccgccgtttggtcagggcatcc
gacatgagtgtgctggtgcgtagccggcgtgaagcctcgctgattcgtgacgcgctgagc
cgtttgtccattccctctgtatatctgtccaatcgcgacagcgtattcagcacgccggaa
gccagcgatatgttgtggctgttgcaggcggtgctggcaccggaacaggaacgcacgtta
cgcagcgcgatggcgacggctctgatggggctggatgccgaacaggttgatgcattaggg
caaagcgaagccgcgtgggatgcgttggtagatgaatttgcgggctaccgtactctgtgg
cgtcagcgcggcgtactgccgatgctgcgtgcgctgatgagtcaacatcagctggcggag
aacctgctggcgagcgcggagggggaacgtcgcattaccgatattctgcatatcggtgag
ttattgcaggatgcctccgcaacccttgatagcgaacatgcgctggtgcgctggctatca
cagcagattgttcaacctaatccgcaggcagagaatcagcagctacgtctggaaagcgat
cgtcacctggtgcagatcgtgacgatccacaaatcgaaagggctcgaatatccgctggta
tggttgcctttcatcagtaacttccgcgtgcaggatcaggggatttatcacgatcgcgaa
agctatcaggccgtgttggatctgcaaaataatgaagaaagccagacgctagcggaagaa
gagcggctggcggaagatttacgtttgctgtatgtcgcgctaacccgttctatctaccac
tgtagcgtaggcgttgcgccggttcagcgatcgcgtaagaaagacggcagcagcgatatg
caccagagcgcgctgggctatttactccagcgcggtaaagaagctgaagctgccacgtta
gtcagcgagctggaaggcatggttggcgacggtgtcgcattaacaccgctacaggcgacg
gaagaacagcgttggcagccggatagaccggaactggcagatctgcgggctcgccacatc
gaacgccagctgcgcgacggctggcgagtaacgagctattcggggcttcagcagcagggt
tctgcaagcgcgcaggatctggtgccgcgtctggatatcgaagcgataggcgagcgtcag
gaagcggacgaaacccagctgacgccgcatacgttcccgcgcggcgcgagtccgggaacg
tttttgcatagcctgtttgaaacgctggatttcactcagcccgttgaggatgactggtta
gctgagcagctgcagctacagggatttgaagcgcactggcacccggtgttaaaggcgtgg
atggatacgcttttgcatacgccgcttaatgagcaagggatcgcgctatcggcactggag
aacgccgataagcaggccgaattacagttctatataccgattgatgcgccaatacaggcg
gcgcagctcgatcggctggcgaaacatcacgacccgctatctgcacgctgtccggcgctc
tcttttcagcaggtgaaaggcatgctgaaagggtttatcgatctggtgttccgctggaaa
ggacgctattacctgctggactataagtccaattggctcggccctgatgccagtgcgtac
acccaaacggccatgatgcagtcgatggtcgaacatcgctatgacttgcaataccagctc
tacacgctggctttgcaccgctatctgcgtcatcgcattgcggattatgactatgagcgc
cactttggcggggtgttttatctgtttttacgcggcgttcaagcgtctcaccccggcaat
ggcatctttgcctgtcgtccctctgctgaatttgttttcgggcttgatgcgctctttaag
ggaaagacgcctgacgatgctgatacaggaattccctcatga
DBGET
integrated database retrieval system
