Pseudoalteromonas sp. Bsw20308: D172_002535
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Entry
D172_002535 CDS
T04175
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D172_002535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_002535
Enzymes [BR:
pbw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
D172_002535
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
D172_002535
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
D172_002535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ALQ07034
LinkDB
All DBs
Position
599102..599911
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVEVSRMGITPHVQNQVVTKVNIYNASMRWPVPDDVYQLEGLIVTSIERRAKYLL
LHCELGSTILHLGMSGNLRVVDKSEPLKKHDHVEFIFGNGKALRLNDPRRFGCCLWQEPG
EVHKLLSKLGPEPLTDDFFAKRVYEQSRNKKVPVKQFIMDNAVVVGVGNIYANESLFKAG
IHPKREAGKVSQKRYQALIPIIKDTLAAAIMQGGTTLKDFAQSDGKPGYFAQELLVYGRK
GKPCMTCESELQEIRLGQRSTVFCSHCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaggtagaagtgagccgaatgggcatcactccccacgtacaaaac
caagttgtcacaaaggtaaatatttacaatgccagtatgcgctggccagtgccagatgac
gtgtatcaacttgaagggctaattgttacaagtattgaacgacgagctaaatacttactt
ttacactgtgagcttggcagtactattttacatttgggtatgtcaggtaatttacgtgtt
gtagataaaagtgagccgcttaaaaagcatgaccatgtagagtttatttttggcaacggt
aaagcactgcgcttaaacgatcctcgtcgttttggttgttgcttatggcaagagcccggt
gaagtgcataagctactctctaagcttggtcctgagccgcttaccgatgatttttttgct
aaacgcgtgtacgaacaatcgcgcaataaaaaagtacccgtaaagcagtttattatggat
aacgcagtggtagtaggtgttggtaacatctatgcgaatgaatcgttatttaaagcgggt
atacatccaaagcgagaagcgggaaaagtttcacaaaagcgctatcaagcacttattcct
attataaaagacacgcttgctgcggctattatgcaaggtggtactacgcttaaagatttt
gcacaaagcgatggtaaaccagggtattttgcacaagaattattagtatatgggcgtaaa
ggcaagccatgtatgacatgtgaaagcgaactgcaagaaatacggctagggcagcgcagc
accgttttttgcagccattgccaaaagtaa
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