Pseudoalteromonas sp. Bsw20308: D172_016190
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Entry
D172_016190 CDS
T04175
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D172_016190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbw03021
]
D172_016190
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_016190
Enzymes [BR:
pbw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D172_016190
Transcription machinery [BR:
pbw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D172_016190
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D172_016190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ALQ09466
LinkDB
All DBs
Position
complement(3703705..3704691)
Genome browser
AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVDIDAINPTRSKIVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVTLEGKDEVFLTLTKSGVGPVTAADIQHDGD
VTIANPDHVICNLTTNNSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLDAFVDLRDVTEP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttctaaaaccaaggttagtcgacatcgacgctatcaac
ccaacgcgttctaaaatagttttagaaccattagagcgaggctttggccatactctgggt
aatgctttacgccgtatattactttcatctatgcctggatgtgcagtaactgaagttgaa
atcgacggtgtattacatgagtacagcgcgaaagaaggcgttcaagaagacatcattgaa
atactattaaaccttaaaggtttagcagtaacgttagaaggcaaagatgaagtttttctg
accctgactaaatctggtgtaggccctgttactgcggctgatattcagcacgatggcgat
gtaacaattgctaatccagatcacgttatttgtaatttaactacaaataacagcgagatc
agcatgcgtattcgtgttgaacgtggtcgtggttatgtgccggcatctagtcgtttatcc
tctgatgacgatgagcgtccaattggtagattgttgcttgatgcatcatttagcccagtt
gaacgtattgcgtactcggttgaatcagctcgagttgagcaacgtacagatttagacaaa
ttaatcattgatatggaaacaaacggcactttagatccagaagaagcgatccgccgtgcg
tctactatcttagctgagcaattagatgcattcgtagatttacgcgatgtaactgagcca
gaagagaaagaagagaagccagaattcgatcctattctacttcgtccagttgatgatctt
gaactaacagtacgctcagcaaattgtttgaaagccgagcaaattcaatatattggtgat
ttagttcagcgcactgaagttgagcttcttaaaacgcctaatctaggtaagaagtctcta
actgaaattaaagacgtgctagcttcacgtggtctttctctgggcatgcgcctagaaaat
tggccgcctgcaagtttagctgaataa
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