Paraburkholderia caffeinilytica: DSC91_002019
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Entry
DSC91_002019 CDS
T06448
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSC91_002019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcaf03400
]
DSC91_002019
Enzymes [BR:
pcaf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
DSC91_002019
DNA repair and recombination proteins [BR:
pcaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DSC91_002019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DUF4130
Motif
Other DBs
NCBI-ProteinID:
AXL50004
LinkDB
All DBs
Position
1:2176256..2177794
Genome browser
AA seq
512 aa
AA seq
DB search
MKRIPIEPSFTAWRRAARTLLRQGVEPSQIEWVESGNEAAAPNNGSGSPTGQTAQSSPTS
AAEQTSSATAAGMPNAEPVGTAAGSVGTGMSATPAIPRELLSWLKTAACFRAPDRWSLLY
RVLWRWTRGERTVLDLGDPDGSLLDQRIRAIEHETEDLLTLTLFRRRDPSMGWPEFVGWY
EPHHDLLARAAARFAARMGDSTWMLATPHGAVFWNGMLMRIDQPAAEEHEQATQALPASV
MTGEAVTSTPTEALWLAYYANAFNAAPLPVPLRYWRMPPAGPPLPARLARERSRLGAQSA
TVTVPSTPPIEYSAMTPPLIEPTGPLATCRRCALWRNAKQAVAGVGPAHAAIMVVGEQPG
EHENQHGEPFTGPDGQLLDAVLARAGLKREALYLTYAVKHYKWETLDQQRVHRTPARREV
EACQYWLEKELARIAPRVVVTLGATALEALTGPHVNLSEYLGQTIAHDGRLIVPAWHPSY
ALRTADAGLRDDIEASIAAAFSRAAALAGDVA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcattccaatcgaaccgtctttcaccgcatggcggcgcgctgcgcggacgctg
ctgcgccaaggtgtcgagccgtcgcagatcgagtgggttgagtccggaaacgaggcggcg
gccccaaataatggcagtggttcgcccacggggcagactgcgcaatcttcgccaacgtcc
gcagcggaacaaacctccagcgcgaccgcagccggcatgccaaacgccgaacccgtcggc
actgccgcaggcagtgtcggcacaggtatgtccgccacacccgcgattccccgcgaactg
ctctcctggctgaaaacggctgcgtgcttccgcgcgccggaccgctggtcgctgctgtac
cgcgtcctatggcgctggacgcgcggcgagcgcaccgtcctcgatctcggcgaccccgac
ggctcgctgctggatcaacgcatccgcgctatcgaacacgaaaccgaggatctgctgaca
ctcacgctgttcagacggcgcgatccgtcaatggggtggccggaattcgtcggctggtac
gagccgcatcatgacctgctggcgcgtgccgccgcgcgcttcgccgctcgcatgggcgat
tccacgtggatgctcgccacgccgcacggcgcggtgttctggaacggcatgctgatgcgc
atcgaccagccggcagcggaggaacacgaacaggccacgcaggcgctaccggccagcgtc
atgaccggcgaagccgtcaccagcacgcccacggaggcgctctggcttgcgtattacgcc
aacgccttcaatgccgcgccgttgcccgtgccgttgcgctactggagaatgccgcccgcg
ggtccgccattgcccgcacgcctcgcgcgtgagcgcagccgtctgggcgcgcaaagcgcc
accgtcaccgtgccgtccacgccgccaatcgagtattcggcgatgacaccgcccttgatc
gagcccactggcccgctcgccacctgccggcgctgcgcgttatggcgcaatgcgaaacag
gcggttgcgggcgtcgggcccgcccatgcggcgatcatggtggtcggcgaacagcccggc
gagcacgagaaccagcacggcgagcccttcaccggcccggacggtcaactgctggacgcc
gtgctggcgcgcgccggtctgaaacgggaagcgctgtatctgacttatgccgtcaagcat
tacaaatgggaaacgctcgatcagcagcgcgtccaccgcacgcccgcgcggcgcgaagtc
gaggcttgccagtactggctggaaaaagaactggcgcggatcgcgccacgcgtggtcgtc
acactgggcgcgaccgcgctggaagcgctgaccggcccgcacgtcaatctgtccgaatac
ctcggccaaaccatcgcccacgacgggcgcctgatcgtgccggcctggcatccgtcgtat
gcgctgagaacggccgacgccggcttgcgcgacgacatcgaggcgtccattgcggcagcg
ttcagccgcgcggcggcgctggcgggagacgtcgcgtag
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