Pseudoalteromonas carrageenovora: PC2016_0233
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Entry
PC2016_0233 CDS
T06565
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PC2016_0233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcar03021
]
PC2016_0233
03400 DNA repair and recombination proteins [BR:
pcar03400
]
PC2016_0233
Enzymes [BR:
pcar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PC2016_0233
Transcription machinery [BR:
pcar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PC2016_0233
DNA repair and recombination proteins [BR:
pcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PC2016_0233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
QBJ70482
LinkDB
All DBs
Position
I:243923..244909
Genome browser
AA seq
328 aa
AA seq
DB search
MQGSVTEFLKPRLVDIDAINPTRSKVVLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSAKEGVQEDIIEILLNLKGLAVTLEGKDEVFLTLTKSGVGPVTAADIQHDGD
VTIANPDHVICHLTTNNSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDASFSPV
ERIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLDAFVDLRDVTEP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEQIQYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASLAE
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttctaaaaccaaggttagtcgacatcgacgctatcaac
ccaacgcgttctaaagtagttttagaaccactagagcgtggcttcggtcatactctgggt
aatgccttacgccgtatactgttatcatctatgcctggatgtgcagtaactgaagttgaa
atcgacggtgtattgcatgagtacagcgcgaaagaaggcgtacaagaagacatcattgaa
atactattaaaccttaaaggtttagcagtaacgttagaaggcaaagatgaagtttttctg
accctgactaaatctggtgtaggccctgtgactgcggctgatattcagcacgatggcgat
gtaacaattgctaatccagatcacgttatttgtcatttaacgacaaataacagcgagatc
agcatgcgtattcgtgttgaacgtggtcgtggttatgtgccggcatctagtcgtttatcc
tctgatgacgatgagcgtccaattggtaggttgttgcttgatgcatcattcagcccagtt
gaacgtattgcgtactcggttgaatcagcccgtgttgagcaacgtacagacttagacaag
ttaatcattgatatggaaacaaacggcactttagatcctgaagaagcgatccgccgtgcg
tctactatcttagctgagcaattagatgcattcgtagatttacgtgatgtaactgagcca
gaagagaaagaagagaagccagaattcgatcctattctacttcgtccagttgatgatctt
gaactaacagtacgttcagcaaactgtttgaaagccgagcaaattcaatatatcggtgat
ttagttcagcgcactgaagttgagcttcttaaaacgcctaatctaggtaagaagtctcta
actgaaataaaagacgtgctagcttcacgtggtctttctctaggcatgcgcctagaaaat
tggccgcctgcaagcctagctgaataa
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