Pseudoalteromonas carrageenovora: PC2016_0757
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Entry
PC2016_0757 CDS
T06565
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
pcar
Pseudoalteromonas carrageenovora
Pathway
pcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC2016_0757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcar03019
]
PC2016_0757
Messenger RNA biogenesis [BR:
pcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC2016_0757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QBJ70996
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All DBs
Position
I:841516..842763
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AA seq
415 aa
AA seq
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MSATSFSSLKLDSLLLTAIEQNNYTTPTAIQVKTIPPILAGNDVMGSAQTGTGKTAAFVL
PLLHKLLNTPKKDEPGIARVVILTPTRELAQQVFASFEKYAQGSNINGALAYGGASIGPQ
IKALKTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPG
DRQTLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYSVDEDRKRELVSHM
IGMKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGTTRVL
VATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEE
IEVLLDTRLAPQWLEGYEPDLNKKPKDNRKNTNKARKDRDKKRITGQRAPSRRRK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctacatcgttctcatctcttaaactcgattcgttattattaacagcgattgag
caaaataattacactacgccaaccgcaattcaggttaaaaccattccgcctattttagcg
ggcaacgatgtaatgggcagtgcacaaacaggcacaggtaaaacagcagcctttgtatta
ccactactacataagcttttaaatacacctaaaaaagatgagccaggcattgcccgagtg
gtcattttaacgccaacgcgtgagcttgctcagcaagtatttgcaagctttgaaaagtac
gctcaaggcagtaatattaatggcgctttagcgtatggcggtgcaagtattggcccgcaa
attaaagcacttaaaacggcgcaagtgatagtggcaacgccaggtcgtttgctcgatcat
atagttaaaggcagtgtggtgctttcaagtgttgattcactagtattcgatgaagcagac
cggatgctcgacatgggctttattgacgaaataaaacgtattctgcgccacattccaggc
gatcgccaaactttattgttctcagcaacatttgacgatagcgtgtttgagctaagtaaa
aagctacttaaaaaccctgagctgattgaagttgataaacgcaattcagccgccgttgaa
gtcgagcaagttatttactcggtagatgaagaccgtaaacgcgagttggtatcgcacatg
attggtatgaaaaactggcgccaagtacttatatttacgcgcaccaagcaaatggccgat
aaacttgccaaagaaatgtgtaaagacggtttaaaaacagaatccattcatggcgataaa
tcgcaaggcgcgcgtgaccgtgcactacaaaactttaaagaaggcactacacgcgtatta
gttgccaccgatgtagcagcgcgtgggctcgatatacctgcgcttaaatatgtaataaat
tttgaactgccatacatagcagaagactacgtacaccgcattggccgtacaggtcgcgcc
ggtgagcaaggccttgcaatgtcgctagtaagtattgatgagcaatggctacttgaagaa
atagaagtcctacttgatacgcgtttagcgcctcaatggttagaaggttacgagccagat
ttaaacaaaaagcctaaagataatcgtaaaaacaccaataaagcgcgaaaagatcgtgat
aaaaaacgcattacaggtcaaagagcacccagtagacgccgtaagtaa
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