Pediococcus claussenii: PECL_978
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Entry
PECL_978 CDS
T01713
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pce
Pediococcus claussenii
Brite
KEGG Orthology (KO) [BR:
pce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pce03016
]
PECL_978 (truB)
Enzymes [BR:
pce01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
PECL_978 (truB)
Transfer RNA biogenesis [BR:
pce03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PECL_978 (truB)
Prokaryotic type
PECL_978 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
SF3b1
Motif
Other DBs
NCBI-ProteinID:
AEV95246
UniProt:
G8PDB1
LinkDB
All DBs
Position
complement(978878..979777)
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AA seq
299 aa
AA seq
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MDGIIPINKERKMTSHDVVAKIRRILHTKRVGHSGTLDPNVDGVLIVCVGKATKVSDYLM
NSGKIYRGKITLGFSTITEDLDGEVIASKVLKIPFTDEELAKTFNSLTGEIIQIPPMYSA
VKVNGRKLYEYARSGEEVERPQRMVSITEFHQIGKSEFDEKRGTQTIKFEVKCSKGTYVR
TLAVDFGKKLGVPAVMSDLTRMSSGGFDLSHTITLNDLSEKVKNQDYSFLHPIETVFKNL
ITYNLSSDELEKVQNGAWLRLNMNDDQLLLKYNDRLQAVYKRDSETNLYRPEKMFLLED
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggacggaattattccaattaataaagaacgtaaaatgactagtcatgatgtagttgca
aaaattagacgaattttgcatactaaaagagttggacatagtggcacactagatcccaat
gtggatggtgtcctaattgtttgtgttggtaaggcaaccaaagtatcagattacttgatg
aactcaggtaaaatttatcggggcaaaatcacgctgggcttttcaacaattactgaagat
ttagacggtgaagttattgcttcaaaggtacttaaaattccttttacggatgaagaatta
gcaaagacttttaatagtttgacaggcgaaatcattcaaattccccctatgtattcggcc
gttaaggttaatggacggaagttgtatgagtatgcaagatctggtgaagaggtagaaaga
ccgcaaagaatggtctcaataactgaatttcatcaaattggaaaaagtgaatttgatgaa
aaacgtggaacgcaaactattaaatttgaagttaagtgtagcaaagggacttatgtacga
actttggcggttgactttggtaagaaattaggtgttccggctgtaatgtcagatcttaca
agaatgtccagcggtggatttgatctatcacatactatcacattgaatgacttatccgaa
aaagttaaaaaccaagattacagctttttacatccaattgaaacagtttttaaaaacctt
ataacatataatctatcgtcggatgaattagaaaaagttcaaaacggagcttggctcaga
cttaatatgaatgatgatcaattgcttttaaaatataatgatagattacaagccgtttat
aaacgagactcagaaacaaatctatatagaccagaaaaaatgtttcttttagaggactaa
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