KEGG   Pseudomonas chlororaphis PA23: EY04_14070Help
Entry
EY04_14070        CDS       T03201                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pch  Pseudomonas chlororaphis PA23
Pathway
pch03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pch00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    EY04_14070 (ligD)
Enzymes [BR:pch01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EY04_14070 (ligD)
DNA repair and recombination proteins [BR:pch03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EY04_14070 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S Peptidase_M29
Motif
Other DBs
NCBI-ProteinID: AIC19991
LinkDB All DBs
Position
complement(3124616..3127150)
Genome map
AA seq 844 aa AA seqDB search
MARSLSEYQRKRDFAITSEPAADKPFGQSAKTASALRFVIQKHAARNLHYDFRLELGGSL
KSWAVPKGPSLDPRQKRLAVHVEDHPLSYGNFEGSIPTGQYGAGDVIVWDHGIWQPHDDP
DASYRAGKLKFTLIGEKLGGDWTLVRTHMRGSGDKEQWLLIKEQDAQARPSDEYDVVQAL
PRSVLSGATVGDNKRAKPQAAKKTAKKPPGKKVVALPQSLAPQLATLVDKAPSGDWRYEI
KFDGYRILARIQDDEVRLLTRNGHDWTSRLPQQAKALAALKLKDSWLDGEMVVLNDQGLP
DFQALQNAFDIGRSVDIIYYLFDAPFLQGEDLRETPVEQRRQALKQALGRKSSKVLRFSE
AFAAHHQDILESACALSLEGVIGKRAGSPYVSRRSADWIKLKCRLRQEFVVVGYTKPQGS
RSGFGALLLGVNDASGLVYAGRVGTGFDQKTLKQLHERMQELERDSSPLAKPLTAAQARG
VHWIEPQLVAEAEFAEWTREQVVRQAAFIALRSDKPASEIVRERPQTFKAVETRSRHTAS
HSDKSAAHSVAGVRITHPERVIDQQSGTTKLQLAQFYASIDQQILPHLRDRPVSLLRAPE
GVEGEQFFQKHAEHLAIPNIRHLDPALDPGHARLMEIDSTSALIGAVQMGTIELHTWGAT
HDQIETPDLFVLDLDPDPALPWKSMLEATQLTLSVLDELGLQAFLKTSGGKGMHLIVPLA
RRADWETVKGFAKAVAQFMAQQLPERITATMGPKNRVGRIFVDYLRNTRGASTVAAYSVR
ARPGLPVSVPIARDELGDVRHAQQWNVANLGQRLEELRRDPWHGFAHRQRITAKMWQQLG
ADRP
NT seq 2535 nt NT seq  +upstreamnt  +downstreamnt
atggccagatccttgagtgaataccagcgcaaacgcgacttcgcgatcacctcggagccg
gcggcggacaaacccttcggccaatccgccaagaccgcctcggccctgcgtttcgtgatc
cagaagcacgctgcgcgcaacctgcactacgactttcgcctggaactgggcggcagcctg
aaaagctgggcggtgcccaagggcccgagcctggaccccaggcaaaaacgcctggcggtg
catgtcgaggaccacccgctgagctatggcaatttcgaaggcagcatccccaccgggcaa
tacggcgccggcgacgtgatcgtctgggaccatggcatctggcaaccccatgacgacccc
gacgccagctaccgggccggcaagctcaagttcaccctgatcggcgagaagctcggcggc
gactggaccctggtgcgcacccatatgcgcggcagcggcgacaaggaacagtggctgctg
atcaaggagcaggatgcccaggcacgaccgagcgacgagtacgacgtggtccaggccctg
cccaggagcgtgctcagcggtgccacggtgggcgacaacaagcgcgccaaaccccaggcc
gcgaaaaaaaccgcgaagaaaccgccaggaaaaaaggtcgtcgccctgccgcaaagcctg
gcgccgcagctggcaaccctggtggacaaggcgcccagcggcgactggcgctacgagatc
aagttcgacggctaccggatcctcgcgcggatccaggacgacgaagtgcgcctgctgacc
cgcaacggtcacgactggaccagccgcctgccccagcaagccaaggccctggccgccctg
aagctcaaggacagctggctggacggcgaaatggtggtgctcaacgaccaaggcctgccg
gacttccaggcattgcagaacgccttcgatatcggtcgcagcgtagacatcatctattac
ctgttcgatgcgccctttctgcagggcgaggacttgcgcgaaacgccggtggaacaacgc
cgtcaggcgctcaagcaggcgctcgggcgcaaatcgagcaaggtcctgcgcttttccgaa
gcctttgccgcccaccaccaggacatcctcgaaagcgcctgcgccctgtccctcgagggg
gtgatcggcaagcgggccggcagcccctatgtgtcgcgccgcagcgccgactggatcaag
ctcaaatgccggctgcgccaggagttcgtggtggtcggctataccaagccgcaaggttcg
cgcagcggctttggcgccctgctgctgggggtcaacgacgcaagcgggctggtgtacgcc
ggccgggtcggcaccggtttcgaccagaagaccttgaagcagctgcatgagcggatgcag
gaacttgaacgggattcatcgccactggccaagcccctgaccgcggcccaggcccgcggc
gtgcactggatcgaaccgcaactggtggccgaagccgagttcgccgagtggacccgcgaa
caggtggtgcgccaggcagccttcatcgccctgcgcagcgataagccggccagcgaaatc
gtccgtgagcggccacagaccttcaaggccgtcgagacccgcagtcggcatacggcctcc
cattcggataaatcggccgcccacagcgtcgccggggtcagaatcacccacccggaacgg
gtcatcgaccagcagtccggcaccaccaagctgcaactggcgcagttctacgccagcatc
gaccagcagatcctgccgcacctgcgcgaccggccggtgtcgctgctgcgggcgcctgaa
ggagtggaaggcgagcagtttttccagaaacatgccgagcacctggccatccccaatatc
cgtcacctcgacccggcgctggaccccggccacgcgcgactgatggaaatcgacagtacg
tcggcgctgatcggcgcggtgcagatgggcaccatcgagctgcacacctggggcgcgact
cacgatcagatcgaaaccccggacctgttcgtgctcgacctcgacccggacccggccctg
ccctggaaaagcatgctggaagccacccaactgaccctgtcggtgctcgatgagctgggc
ttgcaggccttcctgaaaaccagcggcggcaaaggcatgcacctgatcgtgccgctggcg
cgcagggccgactgggaaacggtcaagggcttcgccaaggccgtcgcgcagttcatggcg
cagcagttgccggaacgcatcaccgcgaccatgggcccgaaaaaccgggtcggcaggatc
ttcgtcgattacctgcgcaacacccgcggcgccagcaccgtggccgcctattcggtacgc
gcccgcccgggactgccggtctcggtgcctatcgcccgggatgagctgggcgatgtccgg
catgcccagcagtggaatgtggcgaaccttgggcagcgtctggaggagttacggagggat
ccgtggcacggcttcgcccatcggcagcggatcaccgcgaagatgtggcagcagttgggg
gcggaccggccttga

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